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NM_182961.4(SYNE1):c.14644C>T (p.Arg4882Ter) AND not provided

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
May 1, 2022
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000597761.14

Allele description [Variation Report for NM_182961.4(SYNE1):c.14644C>T (p.Arg4882Ter)]

NM_182961.4(SYNE1):c.14644C>T (p.Arg4882Ter)

Gene:
SYNE1:spectrin repeat containing nuclear envelope protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q25.2
Genomic location:
Preferred name:
NM_182961.4(SYNE1):c.14644C>T (p.Arg4882Ter)
HGVS:
  • NC_000006.12:g.152330041G>A
  • NG_012855.2:g.312359C>T
  • NM_033071.5:c.14431C>T
  • NM_182961.4:c.14644C>TMANE SELECT
  • NP_149062.1:p.Arg4811Ter
  • NP_149062.2:p.Arg4811Ter
  • NP_892006.3:p.Arg4882Ter
  • LRG_427t1:c.14644C>T
  • LRG_427t2:c.14431C>T
  • LRG_427:g.312359C>T
  • LRG_427p1:p.Arg4882Ter
  • LRG_427p2:p.Arg4811Ter
  • NC_000006.11:g.152651176G>A
  • NM_033071.3:c.14431C>T
Protein change:
R4811*
Links:
dbSNP: rs375077588
NCBI 1000 Genomes Browser:
rs375077588
Molecular consequence:
  • NM_033071.5:c.14431C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_182961.4:c.14644C>T - nonsense - [Sequence Ontology: SO:0001587]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000703343Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Pathogenic
(Nov 17, 2016)
germlineclinical testing

Citation Link,

SCV002545461CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Pathogenic
(May 1, 2022)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000703343.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV002545461.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

SYNE1: PVS1, PM2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Apr 15, 2024