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NM_000310.4(PPT1):c.364A>T (p.Arg122Trp) AND Neuronal ceroid lipofuscinosis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 6, 2011
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000581618.1

Allele description [Variation Report for NM_000310.4(PPT1):c.364A>T (p.Arg122Trp)]

NM_000310.4(PPT1):c.364A>T (p.Arg122Trp)

Gene:
PPT1:palmitoyl-protein thioesterase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.2
Genomic location:
Preferred name:
NM_000310.4(PPT1):c.364A>T (p.Arg122Trp)
Other names:
p.R122W:AGG>TGG
HGVS:
  • NC_000001.11:g.40091398T>A
  • NG_009192.1:g.11073A>T
  • NM_000310.4:c.364A>TMANE SELECT
  • NM_001142604.2:c.125-1886A>T
  • NM_001363695.2:c.364A>T
  • NP_000301.1:p.Arg122Trp
  • NP_000301.1:p.Arg122Trp
  • NP_001350624.1:p.Arg122Trp
  • LRG_690t1:c.364A>T
  • LRG_690:g.11073A>T
  • LRG_690p1:p.Arg122Trp
  • NC_000001.10:g.40557070T>A
  • NM_000310.2:c.364A>T
  • NM_000310.3:c.364A>T
  • P50897:p.Arg122Trp
Protein change:
R122W; ARG122TRP
Links:
UniProtKB: P50897#VAR_005553; OMIM: 600722.0001; dbSNP: rs137852695
NCBI 1000 Genomes Browser:
rs137852695
Molecular consequence:
  • NM_001142604.2:c.125-1886A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000310.4:c.364A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363695.2:c.364A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Neuronal ceroid lipofuscinosis
Synonyms:
Ceroid storage disease
Identifiers:
MONDO: MONDO:0016295; MedGen: C0027877; Orphanet: 79263; OMIM: PS256730

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000692330Clinical Molecular Genetics Laboratory, Johns Hopkins All Children's Hospital
no assertion criteria provided
Pathogenic
(Jul 6, 2011)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Clinical Molecular Genetics Laboratory, Johns Hopkins All Children's Hospital, SCV000692330.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 16, 2024