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NM_000091.5(COL4A3):c.1721C>T (p.Pro574Leu) AND multiple conditions

Germline classification:
Benign (1 submission)
Last evaluated:
Apr 28, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000576573.1

Allele description

NM_000091.5(COL4A3):c.1721C>T (p.Pro574Leu)

Genes:
MFF-DT:MFF divergent transcript [Gene - HGNC]
COL4A3:collagen type IV alpha 3 chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q36.3
Genomic location:
Preferred name:
NM_000091.5(COL4A3):c.1721C>T (p.Pro574Leu)
Other names:
NM_000091.4(COL4A3):c.1721C>T(p.Pro574Leu)
HGVS:
  • NC_000002.12:g.227270915C>T
  • NG_011591.1:g.111351C>T
  • NM_000091.4:c.1721C>T
  • NM_000091.5:c.1721C>TMANE SELECT
  • NP_000082.2:p.Pro574Leu
  • NP_000082.2:p.Pro574Leu
  • LRG_230t1:c.1721C>T
  • LRG_230:g.111351C>T
  • LRG_230p1:p.Pro574Leu
  • NC_000002.11:g.228135631C>T
  • NM_000091.3:c.1721C>T
  • Q01955:p.Pro574Leu
Protein change:
P574L
Links:
UniProtKB: Q01955#VAR_011209; dbSNP: rs28381984
NCBI 1000 Genomes Browser:
rs28381984
Molecular consequence:
  • NM_000091.4:c.1721C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_000091.5:c.1721C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Alport syndrome 3, autosomal dominant (ATS3)
Synonyms:
Alport syndrome dominant type; Renal failure and sensorineural hearing loss
Identifiers:
MONDO: MONDO:0007086; MedGen: C4746547; Orphanet: 63; Orphanet: 88918; OMIM: 104200
Name:
Alport syndrome, autosomal recessive (ATS2)
Synonyms:
Alport syndrome recessive type; Nephropathy and deafness; ALPORT SYNDROME 2, AUTOSOMAL RECESSIVE; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008762; MedGen: C4746745; Orphanet: 63; Orphanet: 88919; OMIM: 203780

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000677173Athena Diagnostics Inc
criteria provided, single submitter

(Athena Diagnostics Criteria)		Benign
(Apr 28, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Athena Diagnostics Inc, SCV000677173.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 17, 2021