NM_025077.4(TOE1):c.-34C>T AND Hereditary cancer-predisposing syndrome

Clinical significance:Pathogenic (Last evaluated: Aug 30, 2018)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000569145.1

Allele description [Variation Report for NM_025077.4(TOE1):c.-34C>T]

NM_025077.4(TOE1):c.-34C>T

Genes:
MUTYH:mutY DNA glycosylase [Gene - OMIM - HGNC]
TOE1:target of EGR1, exonuclease [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.1
Genomic location:
Preferred name:
NM_025077.4(TOE1):c.-34C>T
HGVS:
  • NC_000001.11:g.45340219C>T
  • NG_008189.1:g.5252G>A
  • NM_001048171.2:c.-7G>A
  • NM_001128425.1:c.36G>A
  • NM_001128425.2:c.36G>A
  • NM_001293190.2:c.36G>A
  • NM_001293192.2:c.-219G>A
  • NM_001350650.2:c.-278G>A
  • NM_001350651.2:c.-214G>A
  • NM_012222.3:c.36G>A
  • NM_025077.4:c.-34C>TMANE SELECT
  • NP_001121897.1:p.Trp12Ter
  • NP_001121897.1:p.Trp12Ter
  • NP_001280119.1:p.Trp12Ter
  • NP_036354.1:p.Trp12Ter
  • LRG_220t1:c.36G>A
  • LRG_220:g.5252G>A
  • LRG_220p1:p.Trp12Ter
  • NC_000001.10:g.45805891C>T
  • NR_146882.2:n.222G>A
Protein change:
W12*
Links:
dbSNP: rs767402084
NCBI 1000 Genomes Browser:
rs767402084
Molecular consequence:
  • NM_001048171.2:c.-7G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001293192.2:c.-219G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001350650.2:c.-278G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001350651.2:c.-214G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_025077.4:c.-34C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NR_146882.2:n.222G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001128425.1:c.36G>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001128425.2:c.36G>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001293190.2:c.36G>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_012222.3:c.36G>A - nonsense - [Sequence Ontology: SO:0001587]
Observations:
1

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MedGen: C0027672

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000670188Ambry Geneticscriteria provided, single submitter
Pathogenic
(Aug 30, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot provided1not providedclinical testing

Details of each submission

From Ambry Genetics, SCV000670188.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

The p.W12* pathogenic mutation (also known as c.36G>A), located in coding exon 1 of the MUTYH gene, results from a G to A substitution at nucleotide position 36. This changes the amino acid from a tryptophan to a stop codon within coding exon 1. This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown1not providednot provided1not providednot providednot provided

Last Updated: Nov 20, 2021

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