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NM_032776.3(JMJD1C):c.168+10_168+11delinsCG AND Early myoclonic encephalopathy

Germline classification:
Benign (1 submission)
Last evaluated:
Feb 1, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000556415.10

Allele description [Variation Report for NM_032776.3(JMJD1C):c.168+10_168+11delinsCG]

NM_032776.3(JMJD1C):c.168+10_168+11delinsCG

Genes:
JMJD1C-AS1:JMJD1C antisense RNA 1 [Gene - HGNC]
JMJD1C:jumonji domain containing 1C [Gene - OMIM - HGNC]
Variant type:
Indel
Cytogenetic location:
10q21.3
Genomic location:
Preferred name:
NM_032776.3(JMJD1C):c.168+10_168+11delinsCG
HGVS:
  • NC_000010.11:g.63465484_63465485delinsCG
  • NG_053187.1:g.61591_61592delinsCG
  • NM_001318154.2:c.-379+56253_-379+56254delinsCG
  • NM_001322252.2:c.168+10_168+11delinsCG
  • NM_001322258.2:c.-384+56253_-384+56254delinsCG
  • NM_032776.3:c.168+10_168+11delinsCGMANE SELECT
  • NC_000010.10:g.65225244_65225245delinsCG
  • NM_032776.2:c.168+10_168+11delTCinsCG
  • NM_032776.2:c.168+10_168+11delinsCG
  • NR_027182.1:n.256_257delinsCG
Links:
dbSNP: rs34353506
NCBI 1000 Genomes Browser:
rs34353506
Molecular consequence:
  • NM_001318154.2:c.-379+56253_-379+56254delinsCG - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322252.2:c.168+10_168+11delinsCG - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322258.2:c.-384+56253_-384+56254delinsCG - intron variant - [Sequence Ontology: SO:0001627]
  • NM_032776.3:c.168+10_168+11delinsCG - intron variant - [Sequence Ontology: SO:0001627]
  • NR_027182.1:n.256_257delinsCG - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Early myoclonic encephalopathy
Identifiers:
MONDO: MONDO:0016022; MedGen: C0270855

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000632276Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Benign
(Feb 1, 2024) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV000632276.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 5, 2024