NM_000179.3(MSH6):c.905G>A (p.Arg302Lys) AND not provided

Clinical significance:Uncertain significance (Last evaluated: May 15, 2019)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000521245.3

Allele description [Variation Report for NM_000179.3(MSH6):c.905G>A (p.Arg302Lys)]

NM_000179.3(MSH6):c.905G>A (p.Arg302Lys)

Gene:
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.905G>A (p.Arg302Lys)
HGVS:
  • NC_000002.12:g.47798888G>A
  • NG_007111.1:g.20742G>A
  • NM_000179.2:c.905G>A
  • NM_000179.3:c.905G>AMANE SELECT
  • NM_001281492.2:c.515G>A
  • NM_001281493.2:c.-2G>A
  • NM_001281494.2:c.-2G>A
  • NP_000170.1:p.Arg302Lys
  • NP_000170.1:p.Arg302Lys
  • NP_001268421.1:p.Arg172Lys
  • LRG_219t1:c.905G>A
  • LRG_219:g.20742G>A
  • LRG_219p1:p.Arg302Lys
  • NC_000002.11:g.48026027G>A
Protein change:
R172K
Links:
dbSNP: rs587781510
NCBI 1000 Genomes Browser:
rs587781510
Molecular consequence:
  • NM_001281493.2:c.-2G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001281494.2:c.-2G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000179.2:c.905G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_000179.3:c.905G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281492.2:c.515G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000616788GeneDxcriteria provided, single submitter
Uncertain significance
(May 15, 2019)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000616788.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at a significant frequency in large population cohorts (Lek et al., 2016); In silico analysis, which includes protein predictors and evolutionary conservation, supports that this variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge; This variant is associated with the following publications: (PMID: 30212499)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 27, 2021

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