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NM_003244.4(TGIF1):c.272G>A (p.Arg91His) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 24, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000519090.3

Allele description [Variation Report for NM_003244.4(TGIF1):c.272G>A (p.Arg91His)]

NM_003244.4(TGIF1):c.272G>A (p.Arg91His)

Gene:
TGIF1:TGFB induced factor homeobox 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
18p11.31
Genomic location:
Preferred name:
NM_003244.4(TGIF1):c.272G>A (p.Arg91His)
HGVS:
  • NC_000018.10:g.3457393G>A
  • NG_007447.2:g.50320G>A
  • NM_001278682.2:c.281G>A
  • NM_001278684.2:c.272G>A
  • NM_001278686.3:c.212G>A
  • NM_001374396.1:c.212G>A
  • NM_001374397.1:c.212G>A
  • NM_003244.3:c.272G>A
  • NM_003244.4:c.272G>AMANE SELECT
  • NM_170695.5:c.212G>A
  • NM_173207.4:c.314G>A
  • NM_173208.3:c.272G>A
  • NM_173209.3:c.212G>A
  • NM_173210.4:c.212G>A
  • NM_173211.2:c.212G>A
  • NM_174886.3:c.212G>A
  • NP_001265611.1:p.Arg94His
  • NP_001265613.1:p.Arg91His
  • NP_001265615.1:p.Arg71His
  • NP_001361325.1:p.Arg71His
  • NP_001361326.1:p.Arg71His
  • NP_003235.1:p.Arg91His
  • NP_733796.3:p.Arg71His
  • NP_775299.1:p.Arg105His
  • NP_775300.1:p.Arg91His
  • NP_775301.1:p.Arg71His
  • NP_775302.1:p.Arg71His
  • NP_775303.1:p.Arg71His
  • NP_777480.1:p.Arg71His
  • NC_000018.9:g.3457391G>A
  • NM_003244.2:c.272G>A
Protein change:
R105H
Links:
dbSNP: rs921452393
NCBI 1000 Genomes Browser:
rs921452393
Molecular consequence:
  • NM_001278682.2:c.281G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001278684.2:c.272G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001278686.3:c.212G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374396.1:c.212G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374397.1:c.212G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003244.4:c.272G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170695.5:c.212G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_173207.4:c.314G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_173208.3:c.272G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_173209.3:c.212G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_173210.4:c.212G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_173211.2:c.212G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_174886.3:c.212G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000617030GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Uncertain significance
(Nov 24, 2020) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000617030.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at a significant frequency in large population cohorts (Lek et al., 2016); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; A missense variant in a nearby residue (R90C) and a different missense change at this residue (R91C) reported in the Human Gene Mutation Database in association with holoprosencephaly (Stenson et al., 2014); Located in the homeobox DNA-binding region; This variant is associated with the following publications: (PMID: 21940735)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 16, 2024