U.S. flag

An official website of the United States government

NM_000527.5(LDLR):c.362_376del (p.Cys121_Gln125del) AND Hypercholesterolemia, familial, 1

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Mar 1, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000509240.1

Allele description [Variation Report for NM_000527.5(LDLR):c.362_376del (p.Cys121_Gln125del)]

NM_000527.5(LDLR):c.362_376del (p.Cys121_Gln125del)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.362_376del (p.Cys121_Gln125del)
HGVS:
  • NC_000019.10:g.11105268_11105282del
  • NG_009060.1:g.20888_20902del
  • NM_000527.5:c.362_376delMANE SELECT
  • NM_001195798.2:c.362_376del
  • NM_001195799.2:c.239_253del
  • NM_001195800.2:c.314-2124_314-2110del
  • NM_001195803.2:c.314-1297_314-1283del
  • NP_000518.1:p.Cys121_Gln125del
  • NP_000518.1:p.Cys121_Gln125del
  • NP_001182727.1:p.Cys121_Gln125del
  • NP_001182728.1:p.Cys80_Gln84del
  • LRG_274t1:c.362_376del
  • LRG_274:g.20888_20902del
  • LRG_274p1:p.Cys121_Gln125del
  • NC_000019.9:g.11215944_11215958del
  • NM_000527.4:c.362_376del
Links:
dbSNP: rs1555803186
NCBI 1000 Genomes Browser:
rs1555803186
Molecular consequence:
  • NM_000527.5:c.362_376del - inframe_deletion - [Sequence Ontology: SO:0001822]
  • NM_001195798.2:c.362_376del - inframe_deletion - [Sequence Ontology: SO:0001822]
  • NM_001195799.2:c.239_253del - inframe_deletion - [Sequence Ontology: SO:0001822]
  • NM_001195800.2:c.314-2124_314-2110del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195803.2:c.314-1297_314-1283del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Hypercholesterolemia, familial, 1
Synonyms:
LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000607453Fundacion Hipercolesterolemia Familiar - SAFEHEART
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Mar 1, 2016) 		germlineresearch

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fundacion Hipercolesterolemia Familiar - SAFEHEART, SCV000607453.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 5, 2023