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NM_004360.5(CDH1):c.1131del (p.Thr378fs) AND Hereditary cancer-predisposing syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 13, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000492512.8

Allele description [Variation Report for NM_004360.5(CDH1):c.1131del (p.Thr378fs)]

NM_004360.5(CDH1):c.1131del (p.Thr378fs)

Gene:
CDH1:cadherin 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_004360.5(CDH1):c.1131del (p.Thr378fs)
HGVS:
  • NC_000016.10:g.68812257del
  • NG_008021.1:g.79966del
  • NM_001317184.2:c.1131del
  • NM_001317185.2:c.-485del
  • NM_001317186.2:c.-689del
  • NM_004360.5:c.1131delMANE SELECT
  • NP_001304113.1:p.Thr378fs
  • NP_004351.1:p.Thr378fs
  • LRG_301t1:c.1131del
  • LRG_301:g.79966del
  • NC_000016.9:g.68846160del
  • NM_004360.3:c.1131delC
  • NM_004360.5(CDH1):c.1131delMANE SELECT
  • p.Thr378fs
Protein change:
T378fs
Links:
dbSNP: rs1131690812
NCBI 1000 Genomes Browser:
rs1131690812
Molecular consequence:
  • NM_001317185.2:c.-485del - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001317186.2:c.-689del - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001317184.2:c.1131del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_004360.5:c.1131del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000580700Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Pathogenic
(May 13, 2024) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV000580700.7

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.1131delC pathogenic mutation, located in coding exon 8 of the CDH1 gene, results from a deletion of one nucleotide at nucleotide position 1131, causing a translational frameshift with a predicted alternate stop codon (p.T378Pfs*15). This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 22, 2024