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NM_005343.4(HRAS):c.34G>A (p.Gly12Ser) AND Wooly hair nevus

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 1, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000487471.10

Allele description [Variation Report for NM_005343.4(HRAS):c.34G>A (p.Gly12Ser)]

NM_005343.4(HRAS):c.34G>A (p.Gly12Ser)

Genes:
HRAS:HRas proto-oncogene, GTPase [Gene - OMIM - HGNC]
LRRC56:leucine rich repeat containing 56 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.5
Genomic location:
Preferred name:
NM_005343.4(HRAS):c.34G>A (p.Gly12Ser)
Other names:
p.G12S:GGC>AGC; NM_005343.3(HRAS):c.34G>A
HGVS:
  • NC_000011.10:g.534289C>T
  • NG_007666.1:g.6262G>A
  • NM_001130442.3:c.34G>A
  • NM_001318054.2:c.-286G>A
  • NM_005343.4:c.34G>AMANE SELECT
  • NM_176795.5:c.34G>A
  • NP_001123914.1:p.Gly12Ser
  • NP_001123914.1:p.Gly12Ser
  • NP_005334.1:p.Gly12Ser
  • NP_005334.1:p.Gly12Ser
  • NP_789765.1:p.Gly12Ser
  • NP_789765.1:p.Gly12Ser
  • LRG_506t1:c.34G>A
  • LRG_506:g.6262G>A
  • LRG_506p1:p.Gly12Ser
  • NC_000011.9:g.534289C>T
  • NM_001130442.1:c.34G>A
  • NM_001130442.2:c.34G>A
  • NM_005343.2:c.34G>A
  • NM_005343.3:c.34G>A
  • NM_176795.3:c.34G>A
  • NM_176795.4:c.34G>A
  • P01112:p.Gly12Ser
  • c.34G>A
Protein change:
G12S; GLY12SER
Links:
UniProtKB: P01112#VAR_006837; OMIM: 190020.0003; dbSNP: rs104894229
NCBI 1000 Genomes Browser:
rs104894229
Molecular consequence:
  • NM_001318054.2:c.-286G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001130442.3:c.34G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005343.4:c.34G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_176795.5:c.34G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Wooly hair nevus
Synonyms:
NEVUS, WOOLLY HAIR, SOMATIC; Woolly hair nevus
Identifiers:
MONDO: MONDO:0019311; MedGen: C0343114

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000574678OMIM
no assertion criteria provided
Pathogenic
(Apr 1, 2014)
somaticliterature only

PubMed (9)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticnot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Germline mutations in HRAS proto-oncogene cause Costello syndrome.

Aoki Y, Niihori T, Kawame H, Kurosawa K, Ohashi H, Tanaka Y, Filocamo M, Kato K, Suzuki Y, Kure S, Matsubara Y.

Nat Genet. 2005 Oct;37(10):1038-40. Epub 2005 Sep 18.

PubMed [citation]
PMID:
16170316

Genotype-phenotype correlation in Costello syndrome: HRAS mutation analysis in 43 cases.

Kerr B, Delrue MA, Sigaudy S, Perveen R, Marche M, Burgelin I, Stef M, Tang B, Eden OB, O'Sullivan J, De Sandre-Giovannoli A, Reardon W, Brewer C, Bennett C, Quarell O, M'Cann E, Donnai D, Stewart F, Hennekam R, Cavé H, Verloes A, Philip N, et al.

J Med Genet. 2006 May;43(5):401-5. Epub 2006 Jan 27.

PubMed [citation]
PMID:
16443854
PMCID:
PMC2564514
See all PubMed Citations (9)

Details of each submission

From OMIM, SCV000574678.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (9)

Description

Costello Syndrome

In 3 Japanese and in 4 Italian patients with Costello syndrome (218040), Aoki et al. (2005) identified a germline 34G-A transition in the HRAS gene that caused a gly12-to-ser (G12S) amino acid substitution.

Kerr et al. (2006) analyzed the HRAS gene in 43 patients with a clinical diagnosis of Costello syndrome and identified mutations in 37 (86%); G12S was the most common mutation, found in 30 of the 37 mutation-positive patients.

Zampino et al. (2007) identified the G12S mutation in 8 of 9 unrelated patients with Costello syndrome. By analyzing the flanking genomic region, the authors determined that all patients had de novo mutations inherited from the father. There was an advanced age at conception in affected fathers transmitting the mutation. The phenotype was homogeneous.

In a male infant with severe Costello syndrome, Lo et al. (2008) identified the G12S mutation in the HRAS gene. The patient had persistent neonatal hypoglycemia, hypocalcemia, right ventricular hypertrophy, and enlarged kidneys. He required pyloromyotomy for pyloric stenosis and inguinal hernia repair at age 3 months. He had complex upper and lower airway obstruction with a floppy tongue, narrow subglottic opening, and tracheobronchomalacia, requiring a tracheostomy with intermittent ventilatory support. Deterioration of his respiratory function led to the discovery of a pulmonary rhabdomyosarcoma, and he died at 2.25 years of age.

Congenital Myopathy with Excess of Muscle Spindles

Van der Burgt et al. (2007) identified a heterozygous G12S mutation in the HRAS gene in a patient with congenital myopathy with excess of muscle spindles (see 218040), a phenotypic variant of Costello syndrome. The patient, originally reported by Selcen et al. (2001), died at age 14 months of cardiorespiratory failure. He had generalized muscle weakness, areflexia, joint contractures, and clubfeet.

Epidermal Nevus and Urothelial Cancer, Somatic

Hafner et al. (2011) reported a 49-year-old man who had widespread mosaicism for a G12S mutation present in tissues derived from endoderm, ectoderm, and mesoderm, suggesting an embryonic mutation. The patient presented at 49 years of age with widespread congenital epidermal nevus (162900). At 19 years of age a urothelial cell carcinoma was detected in the bladder, and 2 new tumors were identified at 48 years of age. At age 49 a single metastatic lesion was identified in lung.

Nevus Sebaceous, Somatic

Groesser et al. (2012) identified a somatic G12S mutation in 3 (5%) of 65 nevus sebaceous tumors (see 162900).

Woolly Hair Nevus, Somatic

By paired whole-exome sequencing of DNA in affected tissue and blood from 2 unrelated girls with woolly hair nevus (see 162900), Levinsohn et al. (2014) identified heterozygosity for a somatic G12S mutation in the HRAS gene in both individuals. Analysis of hair bulbs from straight and curly patient hair confirmed that the G12S mutation was present in curly hair only. There was no evidence for loss of heterozygosity or a secondary somatic mutation, suggesting that HRAS mutation alone is sufficient to cause woolly hair nevus.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticnot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 20, 2024