NM_006280.3(SSR4):c.352-26GCACCTCCCTT[3] AND not specified

Clinical significance:Likely benign (Last evaluated: Dec 13, 2016)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000481587.1

Allele description [Variation Report for NM_006280.3(SSR4):c.352-26GCACCTCCCTT[3]]

NM_006280.3(SSR4):c.352-26GCACCTCCCTT[3]

Gene:
SSR4:signal sequence receptor subunit 4 [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_006280.3(SSR4):c.352-26GCACCTCCCTT[3]
HGVS:
  • NC_000023.11:g.153798048_153798058CCTCCCTTGCA[3]
  • NG_041795.1:g.8874_8884CCTCCCTTGCA[3]
  • NM_001204526.1:c.385-26GCACCTCCCTT[3]
  • NM_001204527.2:c.376-26GCACCTCCCTT[3]
  • NM_006280.3:c.352-26GCACCTCCCTT[3]
  • NC_000023.10:g.153063503_153063513CCTCCCTTGCA[3]
  • NM_001204526.1:c.385-12_385-2dupCCTCCCTTGCA
Links:
dbSNP: rs782027067
NCBI 1000 Genomes Browser:
rs782027067
Molecular consequence:
  • NM_001204526.1:c.385-26GCACCTCCCTT[3] - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001204527.2:c.376-26GCACCTCCCTT[3] - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_006280.3:c.352-26GCACCTCCCTT[3] - splice acceptor variant - [Sequence Ontology: SO:0001574]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000572369GeneDxcriteria provided, single submitter
Likely benign
(Dec 13, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000572369.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 11, 2019

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