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GRCh37/hg19 7p22.3-21.1(chr7:43360-17656861)x3 AND See cases

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000449347.1

Allele description

GRCh37/hg19 7p22.3-21.1(chr7:43360-17656861)x3

Genes:
  • ARL4A:ADP ribosylation factor like GTPase 4A [Gene - OMIM - HGNC]
  • ADAP1:ArfGAP with dual PH domains 1 [Gene - OMIM - HGNC]
  • BRAT1:BRCA1 associated ATM activator 1 [Gene - OMIM - HGNC]
  • CCZ1B:CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated [Gene - HGNC]
  • CCZ1:CCZ1 homolog, vacuolar protein trafficking and biogenesis associated [Gene - HGNC]
  • CRPPA:CDP-L-ribitol pyrophosphorylase A [Gene - OMIM - HGNC]
  • ETV1:ETS variant transcription factor 1 [Gene - OMIM - HGNC]
  • FBXL18:F-box and leucine rich repeat protein 18 [Gene - OMIM - HGNC]
  • FAM20C:FAM20C golgi associated secretory pathway kinase [Gene - OMIM - HGNC]
  • GNA12:G protein subunit alpha 12 [Gene - OMIM - HGNC]
  • GPER1:G protein-coupled estrogen receptor 1 [Gene - OMIM - HGNC]
  • GPR146:G protein-coupled receptor 146 [Gene - HGNC]
  • GRID2IP:Grid2 interacting protein [Gene - OMIM - HGNC]
  • IQCE:IQ motif containing E [Gene - OMIM - HGNC]
  • KDELR2:KDEL endoplasmic reticulum protein retention receptor 2 [Gene - OMIM - HGNC]
  • LFNG:LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Gene - OMIM - HGNC]
  • MAFK:MAF bZIP transcription factor K [Gene - OMIM - HGNC]
  • MICALL2:MICAL like 2 [Gene - HGNC]
  • NDUFA4:NDUFA4 mitochondrial complex associated [Gene - OMIM - HGNC]
  • PHF14:PHD finger protein 14 [Gene - HGNC]
  • PMS2:PMS1 homolog 2, mismatch repair system component [Gene - OMIM - HGNC]
  • RBAK:RB associated KRAB zinc finger [Gene - OMIM - HGNC]
  • RBAK-RBAKDN:RBAK-RBAKDN readthrough [Gene - HGNC]
  • RAC1:Rac family small GTPase 1 [Gene - OMIM - HGNC]
  • RADIL:Rap associating with DIL domain [Gene - OMIM - HGNC]
  • SUN1:Sad1 and UNC84 domain containing 1 [Gene - OMIM - HGNC]
  • UNCX:UNC homeobox [Gene - HGNC]
  • WIPI2:WD repeat domain, phosphoinositide interacting 2 [Gene - OMIM - HGNC]
  • ACTB:actin beta [Gene - OMIM - HGNC]
  • AP5Z1:adaptor related protein complex 5 subunit zeta 1 [Gene - OMIM - HGNC]
  • AGMO:alkylglycerol monooxygenase [Gene - OMIM - HGNC]
  • AIMP2:aminoacyl tRNA synthetase complex interacting multifunctional protein 2 [Gene - OMIM - HGNC]
  • ANKMY2:ankyrin repeat and MYND domain containing 2 [Gene - HGNC]
  • AGR2:anterior gradient 2, protein disulphide isomerase family member [Gene - OMIM - HGNC]
  • AGR3:anterior gradient 3, protein disulphide isomerase family member [Gene - OMIM - HGNC]
  • AMZ1:archaelysin family metallopeptidase 1 [Gene - OMIM - HGNC]
  • AHR:aryl hydrocarbon receptor [Gene - OMIM - HGNC]
  • BZW2:basic leucine zipper and W2 domains 2 [Gene - OMIM - HGNC]
  • CHST12:carbohydrate sulfotransferase 12 [Gene - OMIM - HGNC]
  • CARD11:caspase recruitment domain family member 11 [Gene - OMIM - HGNC]
  • C7orf50:chromosome 7 open reading frame 50 [Gene - HGNC]
  • COL28A1:collagen type XXVIII alpha 1 chain [Gene - OMIM - HGNC]
  • C1GALT1:core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Gene - OMIM - HGNC]
  • CYP2W1:cytochrome P450 family 2 subfamily W member 1 [Gene - OMIM - HGNC]
  • COX19:cytochrome c oxidase assembly factor COX19 [Gene - OMIM - HGNC]
  • CYTH3:cytohesin 3 [Gene - OMIM - HGNC]
  • DGKB:diacylglycerol kinase beta [Gene - OMIM - HGNC]
  • DAGLB:diacylglycerol lipase beta [Gene - OMIM - HGNC]
  • DNAAF5:dynein axonemal assembly factor 5 [Gene - OMIM - HGNC]
  • EIF2AK1:eukaryotic translation initiation factor 2 alpha kinase 1 [Gene - OMIM - HGNC]
  • EIF3B:eukaryotic translation initiation factor 3 subunit B [Gene - OMIM - HGNC]
  • ELFN1:extracellular leucine rich repeat and fibronectin type III domain containing 1 [Gene - OMIM - HGNC]
  • FAM220A:family with sequence similarity 220 member A [Gene - OMIM - HGNC]
  • FSCN1:fascin actin-bundling protein 1 [Gene - OMIM - HGNC]
  • FOXK1:forkhead box K1 [Gene - OMIM - HGNC]
  • GLCCI1:glucocorticoid induced 1 [Gene - OMIM - HGNC]
  • GET4:guided entry of tail-anchored proteins factor 4 [Gene - OMIM - HGNC]
  • INTS15:integrator complex subunit 15 [Gene - HGNC]
  • INTS1:integrator complex subunit 1 [Gene - OMIM - HGNC]
  • ICA1:islet cell autoantigen 1 [Gene - OMIM - HGNC]
  • LRRC72:leucine rich repeat containing 72 [Gene - HGNC]
  • MIOS:meiosis regulator for oocyte development [Gene - OMIM - HGNC]
  • MEOX2:mesenchyme homeobox 2 [Gene - OMIM - HGNC]
  • MRM2:mitochondrial rRNA methyltransferase 2 [Gene - OMIM - HGNC]
  • MAD1L1:mitotic arrest deficient 1 like 1 [Gene - OMIM - HGNC]
  • MMD2:monocyte to macrophage differentiation associated 2 [Gene - OMIM - HGNC]
  • NXPH1:neurexophilin 1 [Gene - OMIM - HGNC]
  • NUDT1:nudix hydrolase 1 [Gene - OMIM - HGNC]
  • OCM:oncomodulin [Gene - OMIM - HGNC]
  • PDGFA:platelet derived growth factor subunit A [Gene - OMIM - HGNC]
  • PAPOLB:poly(A) polymerase beta [Gene - OMIM - HGNC]
  • PSMG3:proteasome assembly chaperone 3 [Gene - OMIM - HGNC]
  • PRKAR1B:protein kinase cAMP-dependent type I regulatory subunit beta [Gene - OMIM - HGNC]
  • RSPH10B2:radial spoke head 10 homolog B2 [Gene - HGNC]
  • RSPH10B:radial spoke head 10 homolog B [Gene - HGNC]
  • RPA3:replication protein A3 [Gene - OMIM - HGNC]
  • RNF216:ring finger protein 216 [Gene - OMIM - HGNC]
  • SCIN:scinderin [Gene - OMIM - HGNC]
  • SOSTDC1:sclerostin domain containing 1 [Gene - OMIM - HGNC]
  • SDK1:sidekick cell adhesion molecule 1 [Gene - OMIM - HGNC]
  • SLC29A4:solute carrier family 29 member 4 [Gene - OMIM - HGNC]
  • SNX8:sorting nexin 8 [Gene - OMIM - HGNC]
  • TSPAN13:tetraspanin 13 [Gene - OMIM - HGNC]
  • THSD7A:thrombospondin type 1 domain containing 7A [Gene - OMIM - HGNC]
  • TMEM106B:transmembrane protein 106B [Gene - OMIM - HGNC]
  • TMEM184A:transmembrane protein 184A [Gene - HGNC]
  • TNRC18:trinucleotide repeat containing 18 [Gene - HGNC]
  • TTYH3:tweety family member 3 [Gene - OMIM - HGNC]
  • USP42:ubiquitin specific peptidase 42 [Gene - HGNC]
  • VWDE:von Willebrand factor D and EGF domains [Gene - HGNC]
  • ZFAND2A:zinc finger AN1-type containing 2A [Gene - OMIM - HGNC]
  • ZDHHC4:zinc finger DHHC-type palmitoyltransferase 4 [Gene - HGNC]
  • ZNF12:zinc finger protein 12 [Gene - OMIM - HGNC]
  • ZNF316:zinc finger protein 316 [Gene - HGNC]
  • ZNF853:zinc finger protein 853 [Gene - HGNC]
Variant type:
copy number gain
Cytogenetic location:
7p22.3-21.1
Genomic location:
Chr7: 43360 - 17656861 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 7p22.3-21.1(chr7:43360-17656861)x3
HGVS:
    Links:
    dbVar: nssv13651433; dbVar: nsv2778518
    Observations:
    1

    Condition(s)

    Name:
    See cases [See the Variation display for details]
    Identifiers:

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    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV000502815ARUP Laboratories, Cytogenetics and Genomic Microarray,ARUP Laboratories
    no assertion criteria provided
    Pathogenicnot providedclinical testing

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providednot providedyes1not providednot providednot providednot providedclinical testing

    Details of each submission

    From ARUP Laboratories, Cytogenetics and Genomic Microarray,ARUP Laboratories, SCV000502815.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not provided1not providednot providedclinical testingnot provided
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1not providedyesnot providednot providedDiscovery1not providednot providednot provided

    Last Updated: Feb 20, 2022