NM_018100.4(EFHC1):c.475C>G (p.Arg159Gly) AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Dec 9, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000438446.12

Allele description [Variation Report for NM_018100.4(EFHC1):c.475C>G (p.Arg159Gly)]

NM_018100.4(EFHC1):c.475C>G (p.Arg159Gly)

Gene:

EFHC1:EF-hand domain containing 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

6p12.2

Genomic location:

Preferred name:

NM_018100.4(EFHC1):c.475C>G (p.Arg159Gly)

Other names:

p.R159G:CGG>GGG

HGVS:

NC_000006.12:g.52438493C>G
NG_016760.1:g.23298C>G
NM_001172420.2:c.418C>G
NM_018100.4:c.475C>GMANE SELECT
NP_001165891.1:p.Arg140Gly
NP_060570.2:p.Arg159Gly
NC_000006.11:g.52303291C>G
NM_018100.3:c.475C>G
NR_033327.2:n.544C>G

Protein change:

R140G

Links:

dbSNP: rs3804506

NCBI 1000 Genomes Browser:

rs3804506

Molecular consequence:

NM_001172420.2:c.418C>G - missense variant - [Sequence Ontology: SO:0001583]
NM_018100.4:c.475C>G - missense variant - [Sequence Ontology: SO:0001583]
NR_033327.2:n.544C>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000510600	Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely benign (Dec 9, 2016)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000510600

Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely benign
(Dec 9, 2016)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	not provided	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics, SCV000510600.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

Converted during submission from Likely Benign to Likely benign.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		not provided	0.002202	not provided	not provided

Last Updated: Jun 8, 2025

ClinVar

Relating variation to medicine