NM_016373.4(WWOX):c.358C>T (p.Arg120Trp) AND not provided

Clinical significance:Benign/Likely benign (Last evaluated: Oct 2, 2018)

Review status:2 stars out of maximum of 4 stars

criteria provided, multiple submitters, no conflicts

Based on:
3 submissions [Details]
Record status:
current
Accession:
RCV000433686.7

Allele description [Variation Report for NM_016373.4(WWOX):c.358C>T (p.Arg120Trp)]

NM_016373.4(WWOX):c.358C>T (p.Arg120Trp)

Gene:
WWOX:WW domain containing oxidoreductase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q23.1
Genomic location:
Preferred name:
NM_016373.4(WWOX):c.358C>T (p.Arg120Trp)
HGVS:
  • NC_000016.10:g.78115103C>T
  • NG_011698.1:g.20450C>T
  • NM_001291997.2:c.19C>T
  • NM_016373.4:c.358C>TMANE SELECT
  • NM_130791.5:c.358C>T
  • NP_001278926.1:p.Arg7Trp
  • NP_057457.1:p.Arg120Trp
  • NP_570607.1:p.Arg120Trp
  • NC_000016.9:g.78149000C>T
  • NM_016373.2:c.358C>T
  • NM_016373.3:c.358C>T
  • NR_120436.3:n.597C>T
  • Q9NZC7:p.Arg120Trp
Protein change:
R120W
Links:
UniProtKB: Q9NZC7#VAR_023918; dbSNP: rs141361080
NCBI 1000 Genomes Browser:
rs141361080
Molecular consequence:
  • NM_001291997.2:c.19C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_016373.4:c.358C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130791.5:c.358C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_120436.3:n.597C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000511100Center for Pediatric Genomic Medicine,Children's Mercy Hospital and Clinicscriteria provided, single submitter
Likely Benign
(Jul 11, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000521297GeneDxcriteria provided, single submitter
Benign
(May 21, 2018)
germlineclinical testing

Citation Link,

SCV000844898Athena Diagnostics Inccriteria provided, single submitter
Benign
(Oct 2, 2018)
germlineclinical testing

PubMed (9)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Association of WWOX rs9926344 polymorphism with poor prognosis of hepatocellular carcinoma.

Chen W, Zhou C, Zhang W, Atyah M, Yin Y, Guo L, Tang W, Dong Q, Ye Q, Ren N.

J Cancer. 2018;9(7):1239-1247. doi: 10.7150/jca.23808.

PubMed [citation]
PMID:
29675105
PMCID:
PMC5907672
See all PubMed Citations (10)

Details of each submission

From Center for Pediatric Genomic Medicine,Children's Mercy Hospital and Clinics, SCV000511100.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Converted during submission to Likely benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot provided0.007302not providednot provided

From GeneDx, SCV000521297.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 30949922, 27884173, 21983861, 25612104, 11572989, 20480411, 24082139)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Athena Diagnostics Inc, SCV000844898.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (9)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 20, 2021

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