U.S. flag

An official website of the United States government

NM_001166114.2(PNPLA6):c.1253-6C>T AND not specified

Germline classification:
Benign (3 submissions)
Last evaluated:
Feb 1, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000425527.5

Allele description [Variation Report for NM_001166114.2(PNPLA6):c.1253-6C>T]

NM_001166114.2(PNPLA6):c.1253-6C>T

Gene:
PNPLA6:patatin like phospholipase domain containing 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_001166114.2(PNPLA6):c.1253-6C>T
HGVS:
  • NC_000019.10:g.7542555C>T
  • NG_013374.1:g.13404C>T
  • NM_001166111.2:c.1280-6C>T
  • NM_001166112.2:c.1136-6C>T
  • NM_001166113.1:c.1136-6C>T
  • NM_001166114.2:c.1253-6C>TMANE SELECT
  • NM_006702.5:c.1136-6C>T
  • NC_000019.9:g.7607441C>T
  • NM_006702.4:c.1136-6C>T
Links:
dbSNP: rs574930
NCBI 1000 Genomes Browser:
rs574930
Molecular consequence:
  • NM_001166111.2:c.1280-6C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001166112.2:c.1136-6C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001166113.1:c.1136-6C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001166114.2:c.1253-6C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_006702.5:c.1136-6C>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000519578GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Benign
(Feb 1, 2016)
germlineclinical testing

Citation Link,

SCV001742393Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Benigngermlineclinical testing

SCV001951429Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000519578.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV001742393.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001951429.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 18, 2024