U.S. flag

An official website of the United States government

NM_152564.5(VPS13B):c.3427C>T (p.Arg1143Ter) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 6, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000422497.3

Allele description [Variation Report for NM_152564.5(VPS13B):c.3427C>T (p.Arg1143Ter)]

NM_152564.5(VPS13B):c.3427C>T (p.Arg1143Ter)

Gene:
VPS13B:vacuolar protein sorting 13 homolog B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q22.2
Genomic location:
Preferred name:
NM_152564.5(VPS13B):c.3427C>T (p.Arg1143Ter)
HGVS:
  • NC_000008.11:g.99442617C>T
  • NG_007098.2:g.434352C>T
  • NM_017890.5:c.3427C>T
  • NM_152564.5:c.3427C>TMANE SELECT
  • NP_060360.3:p.Arg1143Ter
  • NP_060360.3:p.Arg1143Ter
  • NP_689777.3:p.Arg1143Ter
  • LRG_351t1:c.3427C>T
  • LRG_351:g.434352C>T
  • LRG_351p1:p.Arg1143Ter
  • NC_000008.10:g.100454845C>T
  • NM_017890.3:c.3427C>T
  • NM_017890.4:c.3427C>T
  • NM_152564.4:c.3427C>T
  • NM_152564.5:c.3427C>T
Protein change:
R1143*
Links:
dbSNP: rs386834080
NCBI 1000 Genomes Browser:
rs386834080
Molecular consequence:
  • NM_017890.5:c.3427C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_152564.5:c.3427C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000520846GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Nov 6, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000520846.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at a significant frequency in large population cohorts (Lek et al., 2016); Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; This variant is associated with the following publications: (PMID: 30843084, 32919079, 25525159, 24334764, 20656880, 17990063, 20461111, 31980526, 31589614)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024