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NM_004181.5(UCHL1):c.533G>A (p.Arg178Gln) AND Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 27, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000417182.4

Allele description [Variation Report for NM_004181.5(UCHL1):c.533G>A (p.Arg178Gln)]

NM_004181.5(UCHL1):c.533G>A (p.Arg178Gln)

Gene:
UCHL1:ubiquitin C-terminal hydrolase L1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4p13
Genomic location:
Preferred name:
NM_004181.5(UCHL1):c.533G>A (p.Arg178Gln)
HGVS:
  • NC_000004.12:g.41264109G>A
  • NG_012931.1:g.12229G>A
  • NM_004181.5:c.533G>AMANE SELECT
  • NP_004172.2:p.Arg178Gln
  • NC_000004.11:g.41266126G>A
  • NM_004181.4:c.533G>A
Protein change:
R178Q; ARG178GLN
Links:
OMIM: 191342.0004; dbSNP: rs768996179
NCBI 1000 Genomes Browser:
rs768996179
Molecular consequence:
  • NM_004181.5:c.533G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome
Synonyms:
Spastic paraplegia 79, autosomal recessive; SPASTIC PARAPLEGIA 79B, AUTOSOMAL RECESSIVE
Identifiers:
MONDO: MONDO:0014209; MedGen: C3809665; Orphanet: 352654; OMIM: 615491

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000494672OMIM
no assertion criteria provided
Pathogenic
(Jan 27, 2023)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Novel UCHL1 mutations reveal new insights into ubiquitin processing.

Rydning SL, Backe PH, Sousa MML, Iqbal Z, Øye AM, Sheng Y, Yang M, Lin X, Slupphaug G, Nordenmark TH, Vigeland MD, Bjørås M, Tallaksen CM, Selmer KK.

Hum Mol Genet. 2017 Mar 15;26(6):1031-1040. doi: 10.1093/hmg/ddw391. Erratum in: Hum Mol Genet. 2017 Mar 15;26(6):1217-1218.

PubMed [citation]
PMID:
28007905

Spastic paraparesis associated with optic atrophy in monozygotic twins.

Nyberg-Hansen R, Refsum S.

Acta Neurol Scand Suppl. 1972;51:261-3. No abstract available.

PubMed [citation]
PMID:
4514348

Details of each submission

From OMIM, SCV000494672.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In 3 sibs, including a pair of monozygotic twin brothers, born of unrelated Norwegian parents, with autosomal recessive spastic paraplegia-79B (SPG79B; 615491), Rydning et al. (2017) identified compound heterozygous missense mutations in the UCHL1 gene: a c.533G-A transition (c.533G-A, NM_004181.4), resulting in an arg178-to-gln (R178Q) substitution at a highly conserved residue in the active site, and a c.647C-A transversion, resulting in an ala216-to-asp (A216D; 191342.0005) substitution in a beta-sheet that constitutes a hydrophobic core. The mutations, which were found by whole-exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. Neither mutation was found in the dbSNP, 1000 Genomes Project, or Exome Sequencing Project databases, or in 961 controls. In the ExAC database, the c.647C-A variant was absent, whereas the c.533G-A variant was reported in heterozygous state in 10 individuals. In vitro functional expression studies in E. coli showed that the R178Q mutation resulted in a 4-fold increase in enzyme activity compared to controls. Because expression of the A216D mutation resulted in inclusion bodies, containing presumably misfolded, aggregated proteins, no activity assays of this mutant were possible. Patient fibroblasts showed decreased levels of the UCHL1 protein, at about 25 to 35% of controls, and consisted only of the R178Q mutant; the A216D mutant protein was not detected in patient cells, suggesting that it is degraded. Rydning et al. (2017) noted that the patients did not have cognitive dysfunction, and speculated that the nonsoluble A216D protein results in reduction of UCHL1 function and contributes to neurodegeneration, whereas the increased enzymatic activity of R178Q many compensate and even protect cognitive function. This family had previously been reported by Nyberg-Hansen and Refsum (1972).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 5, 2023