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NM_173494.2(DNAAF6):c.357_363del (p.Val120fs) AND Ciliary dyskinesia, primary, 36, X-linked

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 8, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000417064.1

Allele description [Variation Report for NM_173494.2(DNAAF6):c.357_363del (p.Val120fs)]

NM_173494.2(DNAAF6):c.357_363del (p.Val120fs)

Gene:
DNAAF6:dynein axonemal assembly factor 6 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
Xq22.3
Genomic location:
Preferred name:
NM_173494.2(DNAAF6):c.357_363del (p.Val120fs)
HGVS:
  • NC_000023.11:g.107222769_107222775del
  • NG_016377.1:g.21138_21144del
  • NM_001169154.2:c.357_363del
  • NM_173494.2:c.357_363delMANE SELECT
  • NP_001162625.1:p.Val120fs
  • NP_001162625.1:p.Val120fs
  • NP_775765.1:p.Val120fs
  • NC_000023.10:g.106465999_106466005del
  • NM_001169154.1:c.357_363del
Protein change:
V120fs
Links:
OMIM: 300933.0001; dbSNP: rs1057519568
NCBI 1000 Genomes Browser:
rs1057519568
Molecular consequence:
  • NM_001169154.2:c.357_363del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_173494.2:c.357_363del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Ciliary dyskinesia, primary, 36, X-linked (CILD36)
Synonyms:
CILIARY DYSKINESIA, PRIMARY, 36, WITH OR WITHOUT SITUS INVERSUS
Identifiers:
MONDO: MONDO:0010517; MedGen: C4478372; OMIM: 300991

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000494593OMIM
no assertion criteria provided
Pathogenic
(Feb 8, 2017)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutations in PIH1D3 Cause X-Linked Primary Ciliary Dyskinesia with Outer and Inner Dynein Arm Defects.

Paff T, Loges NT, Aprea I, Wu K, Bakey Z, Haarman EG, Daniels JMA, Sistermans EA, Bogunovic N, Dougherty GW, Höben IM, Große-Onnebrink J, Matter A, Olbrich H, Werner C, Pals G, Schmidts M, Omran H, Micha D.

Am J Hum Genet. 2017 Jan 5;100(1):160-168. doi: 10.1016/j.ajhg.2016.11.019. Epub 2016 Dec 29.

PubMed [citation]
PMID:
28041644
PMCID:
PMC5223094

Details of each submission

From OMIM, SCV000494593.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 2 brothers and their maternal uncle (family PCD-10) with X-linked primary ciliary dyskinesia-36 (CILD36; 300991), Paff et al. (2017) identified a hemizygous 7-bp deletion (c.357_363del, NM_001169154.1) in the PIH1D3 gene, predicted to result in a frameshift and premature termination (Val120LeufsTer6). The mutation, which was found by targeted exome sequencing and confirmed by Sanger sequencing, was not found in the dbSNP, 1000 Genomes Project, Exome Variant Server, or ExAC databases. Analysis of patient cells showed 2 abnormal transcripts: one that included the deletion in exon 6 and another that skipped exon 6. Each mutant transcript altered the reading frame to introduce premature termination in exon 6 and exon 8, respectively, yielding truncated proteins of 125 and 181 residues, respectively. The normal full-length protein is 214 residues. Only 1 of the transcripts appeared to be subject to nonsense-mediated mRNA decay. Western blot analysis of patient respiratory epithelial cells showed absence of the PIH1D3 protein, consistent with a loss of function.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022