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NM_001048174.2(MUTYH):c.1130C>T (p.Pro377Leu) AND not provided

Germline classification:
Pathogenic (8 submissions)
Last evaluated:
Jul 26, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000413961.26

Allele description [Variation Report for NM_001048174.2(MUTYH):c.1130C>T (p.Pro377Leu)]

NM_001048174.2(MUTYH):c.1130C>T (p.Pro377Leu)

Gene:
MUTYH:mutY DNA glycosylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.1
Genomic location:
Preferred name:
NM_001048174.2(MUTYH):c.1130C>T (p.Pro377Leu)
HGVS:
  • NC_000001.11:g.45331529G>A
  • NG_008189.1:g.13942C>T
  • NM_001048171.2:c.1130C>T
  • NM_001048172.2:c.1133C>T
  • NM_001048173.2:c.1130C>T
  • NM_001048174.2:c.1130C>TMANE SELECT
  • NM_001128425.2:c.1214C>T
  • NM_001293190.2:c.1175C>T
  • NM_001293191.2:c.1163C>T
  • NM_001293192.2:c.854C>T
  • NM_001293195.2:c.1130C>T
  • NM_001293196.2:c.854C>T
  • NM_001350650.2:c.785C>T
  • NM_001350651.2:c.785C>T
  • NM_012222.3:c.1205C>T
  • NP_001041636.1:p.Pro391Leu
  • NP_001041636.2:p.Pro377Leu
  • NP_001041637.1:p.Pro378Leu
  • NP_001041638.1:p.Pro377Leu
  • NP_001041639.1:p.Pro377Leu
  • NP_001121897.1:p.Pro405Leu
  • NP_001121897.1:p.Pro405Leu
  • NP_001280119.1:p.Pro392Leu
  • NP_001280120.1:p.Pro388Leu
  • NP_001280121.1:p.Pro285Leu
  • NP_001280124.1:p.Pro377Leu
  • NP_001280125.1:p.Pro285Leu
  • NP_001337579.1:p.Pro262Leu
  • NP_001337580.1:p.Pro262Leu
  • NP_036354.1:p.Pro402Leu
  • NP_036354.1:p.Pro402Leu
  • LRG_220t1:c.1214C>T
  • LRG_220:g.13942C>T
  • LRG_220p1:p.Pro405Leu
  • NC_000001.10:g.45797201G>A
  • NM_001048171.1:c.1172C>T
  • NM_001128425.1:c.1214C>T
  • NM_012222.2:c.1205C>T
  • NR_146882.2:n.1358C>T
  • NR_146883.2:n.1207C>T
  • p.P405L
Protein change:
P262L
Links:
dbSNP: rs529008617
NCBI 1000 Genomes Browser:
rs529008617
Molecular consequence:
  • NM_001048171.2:c.1130C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048172.2:c.1133C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048173.2:c.1130C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048174.2:c.1130C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001128425.2:c.1214C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293190.2:c.1175C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293191.2:c.1163C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293192.2:c.854C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293195.2:c.1130C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293196.2:c.854C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350650.2:c.785C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350651.2:c.785C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_012222.3:c.1205C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_146882.2:n.1358C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146883.2:n.1207C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
2

Condition(s)

Synonyms:
none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000490629GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Jul 26, 2023)
germlineclinical testing

Citation Link,

SCV000601629Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Pathogenic
(May 12, 2017)
germlineclinical testing

PubMed (8)
[See all records that cite these PMIDs]

SCV001449933Clinical Genetics and Genomics, Karolinska University Hospital
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jun 11, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001741692Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Pathogenicgermlineclinical testing

SCV001798721Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus
no assertion criteria provided
Pathogenicgermlineclinical testing

SCV001807168Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus
no assertion criteria provided
Pathogenicgermlineclinical testing

SCV001952002Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Pathogenicgermlineclinical testing

SCV001968492Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Pathogenicgermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Multiplicity in polyp count and extracolonic manifestations in 40 Dutch patients with MYH associated polyposis coli (MAP).

Nielsen M, Franken PF, Reinards TH, Weiss MM, Wagner A, van der Klift H, Kloosterman S, Houwing-Duistermaat JJ, Aalfs CM, Ausems MG, Bröcker-Vriends AH, Gomez Garcia EB, Hoogerbrugge N, Menko FH, Sijmons RH, Verhoef S, Kuipers EJ, Morreau H, Breuning MH, Tops CM, Wijnen JT, Vasen HF, et al.

J Med Genet. 2005 Sep;42(9):e54.

PubMed [citation]
PMID:
16140997
PMCID:
PMC1736132

MUTYH-associated polyposis: 70 of 71 patients with biallelic mutations present with an attenuated or atypical phenotype.

Aretz S, Uhlhaas S, Goergens H, Siberg K, Vogel M, Pagenstecher C, Mangold E, Caspari R, Propping P, Friedl W.

Int J Cancer. 2006 Aug 15;119(4):807-14.

PubMed [citation]
PMID:
16557584
See all PubMed Citations (9)

Details of each submission

From GeneDx, SCV000490629.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Published functional studies demonstrate a damaging effect: variant associated with severely impaired glycosylase activity and severely suppressed oxidative mutagenesis (Kundu et al., 2009; Goto et al., 2010; Shinmura et al., 2012; Komine et al., 2015); Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 23322991, 25820570, 25938944, 23007840, 17674103, 22297469, 19031083, 28152038, 32088803, 32782288, 19836313, 20848659, 19732775, 16140997, 27153395, 28873162, 28790112, 28944238, 27631816, 20191381, 16557584, 16616356, 20618354, 18506705, 17489848, 25937855, 23605219, 31589614, 30787465, 30604180, 34680242, 23108399, 30291343)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV000601629.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (8)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics and Genomics, Karolinska University Hospital, SCV001449933.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV001741692.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV001798721.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus, SCV001807168.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001952002.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001968492.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 13, 2025