NM_054027.6(ANKH):c.*5281del AND Chondrocalcinosis

Germline classification:: Benign (1 submission)
Last evaluated:: Jun 14, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000403232.5

Allele description [Variation Report for NM_054027.6(ANKH):c.*5281del]

NM_054027.6(ANKH):c.*5281del

Genes:

ANKH:ANKH inorganic pyrophosphate transport regulator [Gene - OMIM - HGNC]
OTULIN:OTU deubiquitinase with linear linkage specificity [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

5p15.2

Genomic location:

Preferred name:

NM_054027.6(ANKH):c.*5281del

HGVS:

NC_000005.10:g.14705917del
NG_008273.2:g.170870del
NG_051625.1:g.50124del
NM_054027.6:c.*5281delMANE SELECT
LRG_1362t1:c.*5281del
LRG_1362:g.170870del
NC_000005.9:g.14706026del
NM_054027.4:c.*5281delA

Links:

dbSNP: rs34917282

NCBI 1000 Genomes Browser:

rs34917282

Molecular consequence:

NM_054027.6:c.*5281del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Name:: Chondrocalcinosis
Identifiers:: MONDO: MONDO:0001314; MedGen: C0553730; Human Phenotype Ontology: HP:0000934

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000453519	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification 20161018)	Benign (Jun 14, 2016)	germline	clinical testing	ICSL_Variant_Classification_20161018.pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000453519

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification 20161018)

Benign
(Jun 14, 2016)

germline

clinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000453519.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jun 3, 2023

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