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NM_000368.5(TSC1):c.479G>A (p.Arg160His) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
Jun 29, 2020
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000361865.19

Allele description [Variation Report for NM_000368.5(TSC1):c.479G>A (p.Arg160His)]

NM_000368.5(TSC1):c.479G>A (p.Arg160His)

Gene:
TSC1:TSC complex subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.13
Genomic location:
Preferred name:
NM_000368.5(TSC1):c.479G>A (p.Arg160His)
HGVS:
  • NC_000009.12:g.132923377C>T
  • NG_012386.1:g.26257G>A
  • NM_000368.5:c.479G>AMANE SELECT
  • NM_001162426.2:c.479G>A
  • NM_001162427.2:c.326G>A
  • NM_001362177.2:c.116G>A
  • NP_000359.1:p.Arg160His
  • NP_000359.1:p.Arg160His
  • NP_001155898.1:p.Arg160His
  • NP_001155899.1:p.Arg109His
  • NP_001349106.1:p.Arg39His
  • LRG_486t1:c.479G>A
  • LRG_486:g.26257G>A
  • LRG_486p1:p.Arg160His
  • NC_000009.11:g.135798764C>T
  • NM_000368.4:c.479G>A
Protein change:
R109H
Links:
dbSNP: rs749979841
NCBI 1000 Genomes Browser:
rs749979841
Molecular consequence:
  • NM_000368.5:c.479G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001162426.2:c.479G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001162427.2:c.326G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001362177.2:c.116G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000332721Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Jul 8, 2015)
germlineclinical testing

Citation Link,

SCV001791077GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Jun 29, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000332721.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From GeneDx, SCV001791077.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024