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NM_000041.2(APOE):c.526C>T (p.Arg176Cys) AND not provided

Germline classification:
other, risk factor (2 submissions)
Last evaluated:
Feb 11, 2016
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000346955.2

Allele description

NM_000041.2(APOE):c.526C>T (p.Arg176Cys)

Gene:
APOE:apolipoprotein E [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.32
Genomic location:
Preferred name:
NM_000041.2(APOE):c.526C>T (p.Arg176Cys)
Other names:
R158C; R148C
HGVS:
  • NC_000019.10:g.44908822C>T
  • NG_007084.2:g.8041C>T
  • NM_000041.4:c.526C>TMANE SELECT
  • NM_001302688.2:c.604C>T
  • NM_001302689.2:c.526C>T
  • NM_001302690.1:c.526C>T
  • NM_001302691.2:c.526C>T
  • NP_000032.1:p.Arg176Cys
  • NP_001289617.1:p.Arg202Cys
  • NP_001289618.1:p.Arg176Cys
  • NP_001289619.1:p.Arg176Cys
  • NP_001289620.1:p.Arg176Cys
  • NC_000019.9:g.45412079C>T
  • NM_000041.2:c.526C>T
  • NM_000041.3:c.526C>T
  • P02649:p.Arg176Cys
Protein change:
R176C; ARG148CYS
Links:
PharmGKB: 1183492249; PharmGKB: 1183492249PA448500; PharmGKB Clinical Annotation: 1183492249; UniProtKB: P02649#VAR_000664; OMIM: 107741.0001; OMIM: 107741.0009; OMIM: 107741.0019; OMIM: 107741.0021; dbSNP: rs7412
NCBI 1000 Genomes Browser:
rs7412
Molecular consequence:
  • NM_000041.4:c.526C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302688.2:c.604C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302689.2:c.526C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302690.1:c.526C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302691.2:c.526C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000333416EGL Genetic Diagnostics, Eurofins Clinical Diagnostics
criteria provided, single submitter

(EGL Classification Definitions 2015)
other
(Feb 11, 2016)
germlineclinical testing

Citation Link,

SCV000987597Molecular Diagnostic Laboratory for Inherited Cardiovascular Disease,Montreal Heart Institute
criteria provided, single submitter

(ACMG Guidelines, 2015)
risk factorgermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000333416.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From Molecular Diagnostic Laboratory for Inherited Cardiovascular Disease,Montreal Heart Institute, SCV000987597.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 3, 2021