NM_001365536.1(SCN9A):c.*771_*772dup AND Congenital Indifference to Pain

Clinical significance:Benign (Last evaluated: Jun 14, 2016)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000293873.2

Allele description [Variation Report for NM_001365536.1(SCN9A):c.*771_*772dup]

NM_001365536.1(SCN9A):c.*771_*772dup

Genes:
SCN1A-AS1:SCN1A and SCN9A antisense RNA 1 [Gene - HGNC]
SCN9A:sodium voltage-gated channel alpha subunit 9 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
2q24.3
Genomic location:
Preferred name:
NM_001365536.1(SCN9A):c.*771_*772dup
HGVS:
  • NC_000002.12:g.166197900_166197901dup
  • NG_012798.1:g.183087_183088dup
  • NM_001365536.1:c.*771_*772dupMANE SELECT
  • NM_002977.3:c.*771_*772dup
  • LRG_369t1:c.*771_*772dup
  • LRG_369:g.183087_183088dup
  • NC_000002.11:g.167054410_167054411dup
  • NM_002977.3:c.*771_*772dupAA
Links:
dbSNP: rs144515054
NCBI 1000 Genomes Browser:
rs144515054
Molecular consequence:
  • NM_001365536.1:c.*771_*772dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_002977.3:c.*771_*772dup - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Name:
Congenital Indifference to Pain
Identifiers:
MedGen: C0002768

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000418180Illumina Clinical Services Laboratory,Illuminacriteria provided, single submitter
Benign
(Jun 14, 2016)
germlineclinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Illumina Clinical Services Laboratory,Illumina, SCV000418180.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 27, 2021

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