NM_003383.5(VLDLR):c.2067A>G (p.Gln689=) AND Congenital cerebellar hypoplasia

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jun 14, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000285729.6

Allele description [Variation Report for NM_003383.5(VLDLR):c.2067A>G (p.Gln689=)]

NM_003383.5(VLDLR):c.2067A>G (p.Gln689=)

Gene:

VLDLR:very low density lipoprotein receptor [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9p24.2

Genomic location:

Preferred name:

NM_003383.5(VLDLR):c.2067A>G (p.Gln689=)

HGVS:

NC_000009.12:g.2648773A>G
NG_012741.1:g.31981A>G
NM_001018056.3:c.2067A>G
NM_001322225.2:c.1944A>G
NM_001322226.2:c.1944A>G
NM_003383.5:c.2067A>GMANE SELECT
NP_001018066.1:p.Gln689=
NP_001309154.1:p.Gln648=
NP_001309155.1:p.Gln648=
NP_003374.3:p.Gln689=
NC_000009.11:g.2648773A>G
NM_003383.3:c.2067A>G

Links:

dbSNP: rs6148

NCBI 1000 Genomes Browser:

rs6148

Molecular consequence:

NM_001018056.3:c.2067A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001322225.2:c.1944A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001322226.2:c.1944A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_003383.5:c.2067A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Congenital cerebellar hypoplasia (CHEGDD)
Synonyms:: Isolated cerebellar hypoplasia/agenesis; Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay
Identifiers:: MONDO: MONDO:0008939; MedGen: C5231391; Orphanet: 2246; OMIM: 213000

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000479359	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification 20161018)	Likely benign (Jun 14, 2016)	germline	clinical testing	ICSL_Variant_Classification_20161018.pdf Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000479359

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification 20161018)

Likely benign
(Jun 14, 2016)

germline

clinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000479359.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 16, 2025

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