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NM_000176.3(NR3C1):c.*409del AND Glucocorticoid resistance

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 14, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000277394.5

Allele description [Variation Report for NM_000176.3(NR3C1):c.*409del]

NM_000176.3(NR3C1):c.*409del

Gene:
NR3C1:nuclear receptor subfamily 3 group C member 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
5q31.3
Genomic location:
Preferred name:
NM_000176.3(NR3C1):c.*409del
HGVS:
  • NC_000005.10:g.143281487del
  • NG_009062.1:g.159033del
  • NM_000176.3:c.*409delMANE SELECT
  • NM_001018074.1:c.*409del
  • NM_001018075.1:c.*409del
  • NM_001018076.2:c.*409del
  • NM_001018077.1:c.*409del
  • NM_001020825.2:c.2181+1088del
  • NM_001024094.2:c.*409del
  • NM_001204258.2:c.*409del
  • NM_001204259.2:c.*409del
  • NM_001204260.2:c.*409del
  • NM_001204261.2:c.*409del
  • NM_001204262.2:c.*409del
  • NM_001204263.2:c.*409del
  • NM_001204264.2:c.*409del
  • NM_001364180.2:c.*409del
  • NM_001364181.2:c.*409del
  • NM_001364182.1:c.*409del
  • NM_001364183.2:c.*409del
  • NM_001364184.2:c.*409del
  • NM_001364185.1:c.*409del
  • NC_000005.9:g.142661052del
  • NM_001018077.1:c.*409delC
  • NR_157096.2:n.1666del
Links:
dbSNP: rs10482707
NCBI 1000 Genomes Browser:
rs10482707
Molecular consequence:
  • NM_000176.3:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001018074.1:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001018075.1:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001018076.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001018077.1:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001024094.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204258.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204259.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204260.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204261.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204262.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204263.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001204264.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001364180.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001364181.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001364182.1:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001364183.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001364184.2:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001364185.1:c.*409del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001020825.2:c.2181+1088del - intron variant - [Sequence Ontology: SO:0001627]
  • NR_157096.2:n.1666del - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Glucocorticoid resistance
Synonyms:
Glucocorticoid resistance, generalized; Gccr deficiency; Glucocorticoid receptor deficiency; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0014421; MedGen: C1841972; Orphanet: 786; OMIM: 615962

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000453445Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification 20161018)		Uncertain significance
(Jun 14, 2016) 		germlineclinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000453445.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 9, 2023