U.S. flag

An official website of the United States government

NM_033629.6(TREX1):c.797A>G (p.Glu266Gly) AND Retinal vasculopathy with cerebral leukoencephalopathy and systemic manifestations

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jun 14, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000262094.13

Allele description [Variation Report for NM_033629.6(TREX1):c.797A>G (p.Glu266Gly)]

NM_033629.6(TREX1):c.797A>G (p.Glu266Gly)

Genes:
ATRIP:ATR interacting protein [Gene - OMIM - HGNC]
ATRIP-TREX1:ATRIP-TREX1 readthrough [Gene]
TREX1:three prime repair exonuclease 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p21.31
Genomic location:
Preferred name:
NM_033629.6(TREX1):c.797A>G (p.Glu266Gly)
HGVS:
  • NC_000003.12:g.48467452A>G
  • NG_009820.2:g.6623A>G
  • NG_033100.1:g.38409T>C
  • NG_033100.2:g.42358T>C
  • NG_041782.1:g.25743A>G
  • NG_099340.1:g.513A>G
  • NM_001271022.2:c.*1898A>G
  • NM_001271023.2:c.*1898A>G
  • NM_007248.5:c.767A>G
  • NM_032166.4:c.*1898A>G
  • NM_033629.6:c.797A>GMANE SELECT
  • NM_130384.3:c.*1898A>GMANE SELECT
  • NP_009179.2:p.Glu256Gly
  • NP_338599.1:p.Glu266Gly
  • NP_338599.1:p.Glu266Gly
  • NP_338599.1:p.Glu266Gly
  • LRG_282t1:c.797A>G
  • LRG_282:g.6623A>G
  • LRG_282p1:p.Glu266Gly
  • NC_000003.11:g.48508851A>G
  • NM_033629.2:c.797A>G
  • NM_033629.3:c.797A>G
  • NM_033629.4:c.797A>G
  • NM_130384.3:c.*1898A>G
  • NR_153405.1:n.4106A>G
  • Q9NSU2:p.Glu321Gly
Protein change:
E256G
Links:
UniProtKB: Q9NSU2#VAR_037953; dbSNP: rs55999987
NCBI 1000 Genomes Browser:
rs55999987
Molecular consequence:
  • NM_001271022.2:c.*1898A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001271023.2:c.*1898A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_032166.4:c.*1898A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_130384.3:c.*1898A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_007248.5:c.767A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033629.6:c.797A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_153405.1:n.4106A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Retinal vasculopathy with cerebral leukoencephalopathy and systemic manifestations (RVCLS)
Synonyms:
Vasculopathy, retinal, with cerebral leukodystrophy; Cerebroretinal vasculopathy, hereditary; Retinopathy, vascular, with cerebral and renal involvement and Raynaud and migraine phenomena
Identifiers:
MONDO: MONDO:0008641; MedGen: C1860518; Orphanet: 3421; Orphanet: 63261; Orphanet: 71291; OMIM: 192315

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000445035Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification 20161018)
Likely benign
(Jun 14, 2016)
germlineclinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000445035.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024