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NM_006096.3(NDRG1):c.31G>A (p.Ala11Thr) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 20, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000236080.3

Allele description

NM_006096.3(NDRG1):c.31G>A (p.Ala11Thr)

Gene:
NDRG1:N-myc downstream regulated 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q24.22
Genomic location:
Preferred name:
NM_006096.3(NDRG1):c.31G>A (p.Ala11Thr)
HGVS:
  • NC_000008.11:g.133284281C>T
  • NG_007943.1:g.17975G>A
  • NM_001135242.2:c.31G>A
  • NM_001258432.2:c.-100+12853G>A
  • NM_001258433.1:c.-107G>A
  • NM_006096.3:c.31G>A
  • NP_001128714.1:p.Ala11Thr
  • NP_006087.2:p.Ala11Thr
  • LRG_258t1:c.31G>A
  • LRG_258:g.17975G>A
  • LRG_258p1:p.Ala11Thr
  • NC_000008.10:g.134296524C>T
Protein change:
A11T
Links:
dbSNP: rs145871479
NCBI 1000 Genomes Browser:
rs145871479
Molecular consequence:
  • NM_001258433.1:c.-107G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001258432.2:c.-100+12853G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001135242.2:c.31G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006096.3:c.31G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000292635GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Sep 20, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod

Details of each submission

From GeneDx, SCV000292635.9

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The A11T variant has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. It was not observed with any significant frequency in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project. The A11T variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved through mammals. However, in silico analysis predicts this variant likely does not alter the protein structure/function. Additionally missense mutations have not been reported in the NDRG1 gene in association with neuropathy (Stenson et al., 2009). Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic mutation or a rare benign variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 10, 2021