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NM_032578.4(MYPN):c.3481C>A (p.Leu1161Ile) AND not specified

Germline classification:
Benign/Likely benign (3 submissions)
Last evaluated:
Jul 29, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000216191.20

Allele description [Variation Report for NM_032578.4(MYPN):c.3481C>A (p.Leu1161Ile)]

NM_032578.4(MYPN):c.3481C>A (p.Leu1161Ile)

Gene:
MYPN:myopalladin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q21.3
Genomic location:
Preferred name:
NM_032578.4(MYPN):c.3481C>A (p.Leu1161Ile)
Other names:
p.L1161I:CTC>ATC
HGVS:
  • NC_000010.11:g.68199563C>A
  • NG_032118.1:g.98447C>A
  • NM_001256267.2:c.3481C>A
  • NM_001256268.2:c.2599C>A
  • NM_032578.4:c.3481C>AMANE SELECT
  • NP_001243196.1:p.Leu1161Ile
  • NP_001243196.1:p.Leu1161Ile
  • NP_001243197.1:p.Leu867Ile
  • NP_115967.2:p.Leu1161Ile
  • NP_115967.2:p.Leu1161Ile
  • LRG_410t1:c.3481C>A
  • LRG_410:g.98447C>A
  • LRG_410p1:p.Leu1161Ile
  • NC_000010.10:g.69959320C>A
  • NM_001256267.1:c.3481C>A
  • NM_032578.2:c.3481C>A
  • NM_032578.3:c.3481C>A
  • NR_045662.4:n.3018C>A
  • NR_045663.4:n.3555C>A
  • Q86TC9:p.Leu1161Ile
  • p.(Leu1161Ile)
Protein change:
L1161I
Links:
Leiden Muscular Dystrophy (MYPN): MYPN_00031; UniProtKB: Q86TC9#VAR_069660; dbSNP: rs138313730
NCBI 1000 Genomes Browser:
rs138313730
Molecular consequence:
  • NM_001256267.2:c.3481C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001256268.2:c.2599C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_032578.4:c.3481C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_045662.4:n.3018C>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_045663.4:n.3555C>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Functional consequence:
probably has functional consequence
Observations:
2

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000269405Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Jun 3, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001919358Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

SCV004029750Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Likely benign
(Jul 29, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided22not providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000269405.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)

Description

p.Leu1161Ile in exon 18 of MYPN: This variant is not expected to have clinical s ignificance because it has been identified in 2.8% (320/11566) of Latino chromos omes by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitute.org; dbSNP rs138313730).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided2not provided2not provided

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001919358.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV004029750.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 8, 2025