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NM_001292063.2(OTOG):c.938C>T (p.Pro313Leu) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 7, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000214761.4

Allele description [Variation Report for NM_001292063.2(OTOG):c.938C>T (p.Pro313Leu)]

NM_001292063.2(OTOG):c.938C>T (p.Pro313Leu)

Gene:
OTOG:otogelin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.1
Genomic location:
Preferred name:
NM_001292063.2(OTOG):c.938C>T (p.Pro313Leu)
HGVS:
  • NC_000011.10:g.17558257C>T
  • NG_033191.2:g.15885C>T
  • NM_001277269.2:c.974C>T
  • NM_001292063.2:c.938C>TMANE SELECT
  • NP_001264198.1:p.Pro325Leu
  • NP_001264198.1:p.Pro325Leu
  • NP_001278992.1:p.Pro313Leu
  • NC_000011.9:g.17579804C>T
  • NM_001277269.1:c.974C>T
Protein change:
P313L
Links:
dbSNP: rs767555421
NCBI 1000 Genomes Browser:
rs767555421
Molecular consequence:
  • NM_001277269.2:c.974C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001292063.2:c.938C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000272271Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)		Uncertain significance
(Apr 7, 2016) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000272271.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

The p.Pro325Leu variant in OTOG has not been previously reported in individuals with hearing loss. This variant has been identified in 3/7664 South Asian chromo somes by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitute.org; dbSNP rs767555421). Although this variant has been seen in the general populati on, its frequency is not high enough to rule out a pathogenic role. Computationa l prediction tools and conservation analyses suggest that the p.Pro325Leu varian t may not impact the protein, though this information is not predictive enough t o rule out pathogenicity. In summary, the clinical significance of the p.Pro325L eu variant is uncertain.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Mar 4, 2023