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NM_000166.6(GJB1):c.113T>G (p.Val38Gly) AND Charcot-Marie-Tooth Neuropathy X

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 8, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000199414.8

Allele description [Variation Report for NM_000166.6(GJB1):c.113T>G (p.Val38Gly)]

NM_000166.6(GJB1):c.113T>G (p.Val38Gly)

Gene:
GJB1:gap junction protein beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_000166.6(GJB1):c.113T>G (p.Val38Gly)
HGVS:
  • NC_000023.11:g.71223820T>G
  • NG_008357.1:g.13609T>G
  • NM_000166.6:c.113T>GMANE SELECT
  • NM_001097642.3:c.113T>G
  • NP_000157.1:p.Val38Gly
  • NP_001091111.1:p.Val38Gly
  • LRG_245t2:c.113T>G
  • LRG_245:g.13609T>G
  • LRG_245p2:p.Val38Gly
  • NC_000023.10:g.70443670T>G
  • NM_000166.5:c.113T>G
Protein change:
V38G
Links:
dbSNP: rs863224612
NCBI 1000 Genomes Browser:
rs863224612
Molecular consequence:
  • NM_000166.6:c.113T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001097642.3:c.113T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Charcot-Marie-Tooth Neuropathy X
Identifiers:
MedGen: CN118851

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000254267Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Nov 8, 2022)
germlineclinical testing

PubMed (9)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

X-linked dominant Charcot-Marie-Tooth neuropathy: valine-38-methionine substitution of connexin32.

Orth U, Fairweather N, Exler MC, Schwinger E, Gal A.

Hum Mol Genet. 1994 Sep;3(9):1699-700. No abstract available.

PubMed [citation]
PMID:
7833935

Changes in permeability caused by connexin 32 mutations underlie X-linked Charcot-Marie-Tooth disease.

Oh S, Ri Y, Bennett MV, Trexler EB, Verselis VK, Bargiello TA.

Neuron. 1997 Oct;19(4):927-38.

PubMed [citation]
PMID:
9354338
See all PubMed Citations (9)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV000254267.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (9)

Description

This sequence change replaces valine, which is neutral and non-polar, with glycine, which is neutral and non-polar, at codon 38 of the GJB1 protein (p.Val38Gly). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individual(s) with Charcot-Marie-Tooth disease (Invitae). ClinVar contains an entry for this variant (Variation ID: 216292). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt GJB1 protein function. This variant disrupts the p.Val38 amino acid residue in GJB1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 7833935, 9354338, 9888385, 10400511, 10521546, 12111842, 12457340, 12460545). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 16, 2025