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NM_000744.7(CHRNA4):c.1158_1160delinsGGG (p.Glu387Gly) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 26, 2013
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000186968.1

Allele description [Variation Report for NM_000744.7(CHRNA4):c.1158_1160delinsGGG (p.Glu387Gly)]

NM_000744.7(CHRNA4):c.1158_1160delinsGGG (p.Glu387Gly)

Gene:
CHRNA4:cholinergic receptor nicotinic alpha 4 subunit [Gene - OMIM - HGNC]
Variant type:
Indel
Cytogenetic location:
20q13.33
Genomic location:
Preferred name:
NM_000744.7(CHRNA4):c.1158_1160delinsGGG (p.Glu387Gly)
Other names:
p.E387G:GAG>GGG
HGVS:
  • NC_000020.11:g.63350251_63350253delinsCCC
  • NG_011931.1:g.16091_16093delinsGGG
  • NM_000744.7:c.1158_1160delinsGGGMANE SELECT
  • NM_001256573.2:c.630_632delinsGGG
  • NP_000735.1:p.Glu387Gly
  • NP_001243502.1:p.Glu211Gly
  • NC_000020.10:g.61981603_61981605delinsCCC
  • NM_000744.5:c.1158_1160delinsGGG
  • NR_046317.2:n.1367_1369delinsGGG
Protein change:
E211G
Links:
dbSNP: rs796052320
NCBI 1000 Genomes Browser:
rs796052320
Molecular consequence:
  • NM_000744.7:c.1158_1160delinsGGG - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001256573.2:c.630_632delinsGGG - missense variant - [Sequence Ontology: SO:0001583]
  • NR_046317.2:n.1367_1369delinsGGG - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000240539GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Apr 26, 2013)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000240539.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

c.1158_1160delinsGGG: p.Glu387Gly (E387G) in exon 5 of the CHRNA4 gene (NM_000744.5). The normal sequence with the deleted bases in braces, following immediately by the inserted bases in brackets is: TGGCC{CGA}[GGG]GCCA.The c.1158_1160delCGAinsGGG variant has not been published as a mutation nor has it been reported as a benign polymorphism, to our knowledge. This variant is not expected to result in protein truncation or nonsense-mediated mRNA decay but instead replaces a negatively charged polar Glutamic acid residue (CGA) with an uncharged non-polar Glycine residue (GGG), a change denoted as Glu387Gly (E387G). The NHLBI ESP Exome Variant Project has not identified Glu387Gly in approximately 6,500 individuals of European or African American ethnicity, indicating that it is not a common benign variant in these populations.The Glu387Gly substitution alters a position that is conserved in mammals but not in related species, and it does not occur within the transmembrane region of the protein where most of the pathogenic missense mutations have been identified in association with epilepsy (Steinlein et al., 2010). In addition, in silico algorithms are not consistent in their predictions of whether Glu387Gly is damaging to the structure/function of the CHRNA4 protein. Therefore, based on the currently available information, it is unclear whether Glu387Gly is a disease-causing mutation or a rare benign variant. The variant is found in EPILEPSY panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022