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NM_001005242.3(PKP2):c.533dup (p.His179fs) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 29, 2013
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000183782.1

Allele description [Variation Report for NM_001005242.3(PKP2):c.533dup (p.His179fs)]

NM_001005242.3(PKP2):c.533dup (p.His179fs)

Gene:
PKP2:plakophilin 2 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
12p11.21
Genomic location:
Preferred name:
NM_001005242.3(PKP2):c.533dup (p.His179fs)
Other names:
p.His179AlafsX37
HGVS:
  • NC_000012.12:g.32878347dup
  • NG_009000.1:g.23500dup
  • NM_001005242.3:c.533dupMANE SELECT
  • NM_004572.4:c.533dup
  • NP_001005242.2:p.His179fs
  • NP_004563.2:p.His179fs
  • NP_004563.2:p.His179fs
  • LRG_398t1:c.533dup
  • LRG_398:g.23500dup
  • LRG_398p1:p.His179fs
  • NC_000012.11:g.33031280_33031281insA
  • NC_000012.11:g.33031281dup
  • NM_004572.3:c.533dup
  • NM_004572.3:c.533dup
  • NM_004572.3:c.533dupT
  • p.H179AfsX37
Protein change:
H179fs
Links:
dbSNP: rs769220833
NCBI 1000 Genomes Browser:
rs769220833
Molecular consequence:
  • NM_001005242.3:c.533dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_004572.4:c.533dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000236263GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(May 29, 2013)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000236263.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

c.533dupT: p.His179AlafsX37 (H179AfsX37) in exon 3 of the PKP2 gene (NM_004572.3). The normal sequence with the base that is inserted in braces is: ACCC{T}GCAC. Although the c.533dupT mutation in the PKP2 gene has not been reported to our knowledge, this mutation causes a shift in reading frame starting at codon Histidine 179, changing it to an Alanine, and creating a premature stop codon at position 37 of the new reading frame, denoted p.His179AlafsX37. This mutation is expected to result in either an abnormal, truncated protein product or loss of protein from this allele through nonsense-mediated mRNA decay. Other frameshift mutations in the PKP2 gene have been reported in association with ARVC. The c.533dupT mutation in the PKP2 gene also has been observed in one other unrelated individuals at GeneDx. In summary, c.533dupT in the PKP2 gene is interpreted as a disease-causing mutation. Arrhythmogenic right ventricular cardiomyopathy (ARVC) is primarily an autosomal dominant disease characterized by progressive fibrofatty replacement of the myocardium that predisposes to ventricular tachycardia and sudden death (McNally E et al., 2009; Nava A et al., 2000). ARVC is most frequently caused by mutations in the genes encoding desmosomal proteins, complexes that maintain cell-to-cell connections and provide mechanical attachments among adjacent cells. Less commonly, ARVC may be caused by mutations in genes that encode proteins that maintain calcium homeostasis (McNally E et al., 2009). At least 11% of patients with autosomal dominant arrhythmogenic right ventricular cardiomyopathy were reported to have a mutation in the PKP2 gene (McNally E et al., 2009). The variant is found in ARVC panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024