NM_000142.5(FGFR3):c.603T>C (p.Ile201=) AND not specified

Clinical significance:Benign (Last evaluated: Aug 28, 2018)

Review status:2 stars out of maximum of 4 stars

criteria provided, multiple submitters, no conflicts

Based on:
6 submissions [Details]
Record status:
current
Accession:
RCV000178712.7

Allele description [Variation Report for NM_000142.5(FGFR3):c.603T>C (p.Ile201=)]

NM_000142.5(FGFR3):c.603T>C (p.Ile201=)

Gene:
FGFR3:fibroblast growth factor receptor 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4p16.3
Genomic location:
Preferred name:
NM_000142.5(FGFR3):c.603T>C (p.Ile201=)
HGVS:
  • NC_000004.12:g.1801524T>C
  • NG_012632.1:g.13213T>C
  • NM_000142.5:c.603T>CMANE SELECT
  • NM_001163213.1:c.603T>C
  • NM_001354809.2:c.603T>C
  • NM_001354810.2:c.603T>C
  • NM_022965.3:c.603T>C
  • NP_000133.1:p.Ile201=
  • NP_000133.1:p.Ile201=
  • NP_001156685.1:p.Ile201=
  • NP_001341738.1:p.Ile201=
  • NP_001341739.1:p.Ile201=
  • NP_075254.1:p.Ile201=
  • LRG_1021t1:c.603T>C
  • LRG_1021t2:c.603T>C
  • LRG_1021:g.13213T>C
  • LRG_1021p1:p.Ile201=
  • LRG_1021p2:p.Ile201=
  • NC_000004.11:g.1803251T>C
  • NM_000142.4:c.603T>C
  • NR_148971.2:n.878T>C
Links:
dbSNP: rs2305181
NCBI 1000 Genomes Browser:
rs2305181
Molecular consequence:
  • NR_148971.2:n.878T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_000142.5:c.603T>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001163213.1:c.603T>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354809.2:c.603T>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354810.2:c.603T>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_022965.3:c.603T>C - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
3

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000230848EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Benign
(Aug 28, 2018)
germlineclinical testing

Citation Link,

SCV000302633PreventionGenetics,PreventionGeneticscriteria provided, single submitter
Benigngermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000516462GeneDxcriteria provided, single submitter
Benign
(May 27, 2016)
germlineclinical testing

Citation Link,

SCV001798955Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensusno assertion criteria providedBenigngermlineclinical testing

SCV001921156Clinical Genetics,Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria providedBenigngermlineclinical testing

SCV001967613Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria providedBenigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000230848.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

From PreventionGenetics,PreventionGenetics, SCV000302633.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV000516462.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV001798955.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics,Academic Medical Center - VKGL Data-share Consensus, SCV001921156.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001967613.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 6, 2021

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