NM_014336.5(AIPL1):c.401A>T (p.Tyr134Phe) AND not specified

Clinical significance:Benign/Likely benign (Last evaluated: May 5, 2015)

Review status:2 stars out of maximum of 4 stars

criteria provided, multiple submitters, no conflicts

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000177283.5

Allele description [Variation Report for NM_014336.5(AIPL1):c.401A>T (p.Tyr134Phe)]

NM_014336.5(AIPL1):c.401A>T (p.Tyr134Phe)

Gene:
AIPL1:aryl hydrocarbon receptor interacting protein like 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.2
Genomic location:
Preferred name:
NM_014336.5(AIPL1):c.401A>T (p.Tyr134Phe)
HGVS:
  • NC_000017.11:g.6428382T>A
  • NG_008474.1:g.11818A>T
  • NM_001033054.3:c.277-1325A>T
  • NM_001033055.3:c.221A>T
  • NM_001285399.3:c.365A>T
  • NM_001285400.3:c.335A>T
  • NM_001285401.3:c.401A>T
  • NM_001285402.2:c.284A>T
  • NM_001285403.3:c.401A>T
  • NM_014336.5:c.401A>TMANE SELECT
  • NP_001028227.1:p.Tyr74Phe
  • NP_001272328.1:p.Tyr122Phe
  • NP_001272329.1:p.Tyr112Phe
  • NP_001272330.1:p.Tyr134Phe
  • NP_001272331.1:p.Tyr95Phe
  • NP_001272332.1:p.Tyr134Phe
  • NP_055151.3:p.Tyr134Phe
  • NC_000017.10:g.6331702T>A
  • NM_014336.3:c.401A>T
  • NM_014336.4:c.401A>T
  • Q9NZN9:p.Tyr134Phe
Protein change:
Y112F
Links:
UniProtKB: Q9NZN9#VAR_050627; dbSNP: rs16955851
NCBI 1000 Genomes Browser:
rs16955851
Molecular consequence:
  • NM_001033054.3:c.277-1325A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001033055.3:c.221A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001285399.3:c.365A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001285400.3:c.335A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001285401.3:c.401A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001285402.2:c.284A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001285403.3:c.401A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_014336.5:c.401A>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
3

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000229127EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Likely benign
(May 5, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV000312138PreventionGenetics,PreventionGeneticscriteria provided, single submitter
Benigngermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Citations

PubMed

Interaction of aryl hydrocarbon receptor-interacting protein-like 1 with the farnesyl moiety.

Majumder A, Gopalakrishna KN, Cheguru P, Gakhar L, Artemyev NO.

J Biol Chem. 2013 Jul 19;288(29):21320-21328. doi: 10.1074/jbc.M113.476242. Epub 2013 Jun 4.

PubMed [citation]
PMID:
23737531
PMCID:
PMC3774400

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000229127.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

From PreventionGenetics,PreventionGenetics, SCV000312138.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 10, 2021

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