NM_020822.3(KCNT1):c.2944-52CTCC[8] AND not specified

Clinical significance:Benign/Likely benign (Last evaluated: Apr 28, 2017)

Review status:2 stars out of maximum of 4 stars

criteria provided, multiple submitters, no conflicts

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000176683.3

Allele description [Variation Report for NM_020822.3(KCNT1):c.2944-52CTCC[8]]

NM_020822.3(KCNT1):c.2944-52CTCC[8]

Gene:
KCNT1:potassium sodium-activated channel subfamily T member 1 [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
9q34.3
Genomic location:
Preferred name:
NM_020822.3(KCNT1):c.2944-52CTCC[8]
HGVS:
  • NC_000009.12:g.135784485_135784488CCCT[8]
  • NG_033070.1:g.87301_87304CCCT[8]
  • NM_001272003.2:c.2809-52CTCC[8]
  • NM_020822.3:c.2944-52CTCC[8]MANE SELECT
  • NC_000009.11:g.138676331_138676334CCCT[8]
  • NM_020822.2:c.2944-18_2944-7delCCCTCCCTCCCT
  • NM_020822.2:c.2944-18_2944-7delCCCTCCCTCCCT
Links:
dbSNP: rs55843930
NCBI 1000 Genomes Browser:
rs55843930
Molecular consequence:
  • NM_001272003.2:c.2809-52CTCC[8] - intron variant - [Sequence Ontology: SO:0001627]
  • NM_020822.3:c.2944-52CTCC[8] - intron variant - [Sequence Ontology: SO:0001627]
Observations:
27

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000228374EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Benign
(Apr 5, 2016)
germlineclinical testing

Citation Link,

SCV000568887GeneDxcriteria provided, single submitter
Likely benign
(Apr 28, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown27not providednot providednot providednot providedclinical testing
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000228374.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided27not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided27not providednot providednot provided

From GeneDx, SCV000568887.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 27, 2021

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