U.S. flag

An official website of the United States government

NM_001099857.5(IKBKG):c.1259A>G (p.Ter420Trp) AND Incontinentia pigmenti syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 1, 2001
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000170521.6

Allele description [Variation Report for NM_001099857.5(IKBKG):c.1259A>G (p.Ter420Trp)]

NM_001099857.5(IKBKG):c.1259A>G (p.Ter420Trp)

Gene:
IKBKG:inhibitor of nuclear factor kappa B kinase regulatory subunit gamma [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001099857.5(IKBKG):c.1259A>G (p.Ter420Trp)
Other names:
*420W; *321W; *488W; *419W
HGVS:
  • NC_000023.11:g.154564460A>G
  • NG_009896.1:g.27217A>G
  • NM_001099856.6:c.1463A>G
  • NM_001099857.5:c.1259A>GMANE SELECT
  • NM_001145255.4:c.962A>G
  • NM_001321396.3:c.1259A>G
  • NM_001321397.3:c.1256A>G
  • NM_001377312.1:c.1259A>G
  • NM_001377313.1:c.1256A>G
  • NM_001377314.1:c.1103A>G
  • NM_001377315.1:c.890A>G
  • NM_003639.4:c.1259A>G
  • NP_001093326.2:p.Ter488Trp
  • NP_001093327.1:p.Ter420Trp
  • NP_001138727.1:p.Ter321Trp
  • NP_001308325.1:p.Ter420Trp
  • NP_001308326.1:p.Ter419Trp
  • NP_001364241.1:p.Ter420Trp
  • NP_001364242.1:p.Ter419Trp
  • NP_001364243.1:p.Ter368Trp
  • NP_001364244.1:p.Ter297Trp
  • NP_003630.1:p.Ter420Trp
  • LRG_70:g.27217A>G
  • NC_000023.10:g.153792675A>G
  • NR_165197.1:n.1128A>G
Protein change:
TER420TRP
Links:
OMIM: 300248.0002; dbSNP: rs137853321
NCBI 1000 Genomes Browser:
rs137853321
Molecular consequence:
  • NR_165197.1:n.1128A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001099856.6:c.1463A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_001099857.5:c.1259A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_001145255.4:c.962A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_001321396.3:c.1259A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_001321397.3:c.1256A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_001377312.1:c.1259A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_001377313.1:c.1256A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_001377314.1:c.1103A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_001377315.1:c.890A>G - stop lost - [Sequence Ontology: SO:0001578]
  • NM_003639.4:c.1259A>G - stop lost - [Sequence Ontology: SO:0001578]

Condition(s)

Name:
Incontinentia pigmenti syndrome (IP)
Synonyms:
INCONTINENTIA PIGMENTI, TYPE II; Incontinentia pigmenti, familial male-lethal type; Bloch-Sulzberger syndrome; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010631; MedGen: C0021171; Orphanet: 464; OMIM: 308300

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000223086OMIM
no assertion criteria provided
Pathogenic
(Mar 1, 2001)
germlineliterature only

The International Incontinentia Pigmenti Consortium Genomic rearrangement in NEMO impairs NF-kappa-B activation and is a cause of incontinentia pigmenti. Nature 405: 466-472, 2000.

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Details of each submission

From OMIM, SCV000223086.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature onlynot provided

Description

In a male infant (patient IP85) with ectodermal dysplasia and immunodeficiency-1 (EDAID1; 300291), The International Incontinentia Pigmenti Consortium (2000) identified a hemizygous c.1259A-G transition in exon 10 of the IKBKG gene, resulting in a stop420-to-trp (X420W) substitution. This change results in the addition of 27 residues to the C terminus of the mature protein. The mutation was also found in heterozygous state in his mother, who had incontinentia pigmenti (IP; 308300). In addition to recurrent infections, the boy also had osteopetrosis and lymphedema. He died at age 2.5 years from a tuberculosis infection.

Doffinger et al. (2001) studied patient IP85 reported by The International Incontinentia Pigmenti Consortium (2000) as well as another boy, of French descent, with the hemizygous X420W mutation and classified both as having anhidrotic ectodermal dysplasia with immunodeficiency, osteopetrosis, and lymphedema (OLEDAID; see 300291), which is within the phenotypic spectrum of EDAID1. Infections in the French boy, who died at the age of 1.5 years, included atypical mycobacteria and pneumococcus; he also had osteopetrosis and lymphedema, indicating that these additional features are associated with this specific mutation. His mother, who carried the mutation in heterozygous state, had mild IP. Detailed in vitro functional expression studies showed that the X420W mutation resulted in a 50 to 60% reduction of NF-kappa-B activation. Cells from both male patients with this mutation showed impaired cellular responses to LPS, IL1B, and TNFA. The findings indicated that the X420W mutation impairs, but does not abolish, NFKB activation, consistent with a hypomorphic allele and postnatal survival of the boys.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 30, 2023