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NM_002334.4(LRP4):c.3697G>A (p.Glu1233Lys) AND Congenital myasthenic syndrome 17

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Apr 14, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000170320.6

Allele description [Variation Report for NM_002334.4(LRP4):c.3697G>A (p.Glu1233Lys)]

NM_002334.4(LRP4):c.3697G>A (p.Glu1233Lys)

Gene:
LRP4:LDL receptor related protein 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p11.2
Genomic location:
Preferred name:
NM_002334.4(LRP4):c.3697G>A (p.Glu1233Lys)
HGVS:
  • NC_000011.10:g.46875806C>T
  • NG_021394.1:g.47817G>A
  • NM_002334.4:c.3697G>AMANE SELECT
  • NP_002325.2:p.Glu1233Lys
  • NC_000011.9:g.46897357C>T
  • NM_002334.3:c.3697G>A
  • O75096:p.Glu1233Lys
Protein change:
E1233K; GLU1233LYS
Links:
UniProtKB: O75096#VAR_073695; OMIM: 604270.0011; dbSNP: rs786205153
NCBI 1000 Genomes Browser:
rs786205153
Molecular consequence:
  • NM_002334.4:c.3697G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Congenital myasthenic syndrome 17
Identifiers:
MONDO: MONDO:0014578; MedGen: C4225377; Orphanet: 590; OMIM: 616304

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000222707OMIM
no assertion criteria provided
Pathogenic
(Apr 1, 2014)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV002059482Centogene AG - the Rare Disease Company
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Apr 14, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

LRP4 third β-propeller domain mutations cause novel congenital myasthenia by compromising agrin-mediated MuSK signaling in a position-specific manner.

Ohkawara B, Cabrera-Serrano M, Nakata T, Milone M, Asai N, Ito K, Ito M, Masuda A, Ito Y, Engel AG, Ohno K.

Hum Mol Genet. 2014 Apr 1;23(7):1856-68. doi: 10.1093/hmg/ddt578. Epub 2013 Nov 13.

PubMed [citation]
PMID:
24234652
PMCID:
PMC3943522

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From OMIM, SCV000222707.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a 17-year-old girl with congenital myasthenic syndrome-17 (CMS17; 616304), Ohkawara et al. (2014) identified compound heterozygous missense mutations in the LRP4 gene: a c.3697G-A transition (chr11.46,897,357G-A, GRCh37), resulting in a glu1233-to-lys (E1233K) substitution, and a c.3830G-A transition, resulting in an arg1277-to-his (R1277H; 604270.0012) substitution. The mutations, which were found by exome sequencing and confirmed by Sanger sequencing, were filtered against the dbSNP (build 137) database. The E1233K mutation was present in the patient's unaffected father; DNA from the mother was unavailable. Both substitutions occurred at conserved residues in the third beta-propeller domain of the protein, and were located on the edge of the fifth and sixth blades, respectively. In vitro functional expression studies showed that both mutations decreased binding affinity of LRP4 for agrin (AGRN; 103320) and MuSK (601296) and did not enhance downstream activation of the MuSK signaling pathway, thus impairing clustering of acetylcholine receptors (AChRs). Neither mutation had an effect on WNT (164820) signaling. Patient skeletal muscle biopsy showed type 1 fiber predominance and irregularly arrayed synaptic contacts that varied in shape and size. Electron microscopy showed that the size of the nerve terminals was reduced to 60% and that of the postsynaptic region to 48%. There was normal expression of the AChR and acetylcholinesterase (AChE; 100740), although the total number of AChRs per endplate was slightly decreased.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Centogene AG - the Rare Disease Company, SCV002059482.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 5, 2024