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NM_015404.4(WHRN):c.1992G>A (p.Pro664=) AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Nov 24, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000155080.2

Allele description

NM_015404.4(WHRN):c.1992G>A (p.Pro664=)

Gene:
WHRN:whirlin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q32
Genomic location:
Preferred name:
NM_015404.4(WHRN):c.1992G>A (p.Pro664=)
HGVS:
  • NC_000009.12:g.114406599C>T
  • NG_016700.1:g.103858G>A
  • NM_001083885.3:c.843G>A
  • NM_001173425.2:c.1992G>A
  • NM_001346890.1:c.939G>A
  • NM_015404.4:c.1992G>AMANE SELECT
  • NP_001077354.2:p.Pro281=
  • NP_001166896.1:p.Pro664=
  • NP_001333819.1:p.Pro313=
  • NP_056219.3:p.Pro664=
  • LRG_1094t1:c.1992G>A
  • LRG_1094:g.103858G>A
  • LRG_1094p1:p.Pro664=
  • NC_000009.11:g.117168879C>T
  • NM_015404.2:c.1992G>A
  • NM_015404.3:c.1992G>A
  • p.Pro664Pro
Links:
dbSNP: rs142568702
NCBI 1000 Genomes Browser:
rs142568702
Molecular consequence:
  • NM_001083885.3:c.843G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001173425.2:c.1992G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001346890.1:c.939G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_015404.4:c.1992G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
3

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000204764Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Likely benign
(Nov 24, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided33not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, SCV000204764.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testing PubMed (1)

Description

p.Pro664Pro in Exon 9 of DFNB31: This variant is not expected to have clinical s ignificance because it does not alter an amino acid residue, is not located with in the splice consensus sequence, and has been identified in 0.25% (26/10318) of African chromosomes by the Exome Aggregation Consortium (ExAC, http://exac.broa dinstitute.org; dbSNP rs142568702).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided3not provided3not provided

Last Updated: Apr 8, 2022