NM_022124.6(CDH23):c.3162C>G (p.Thr1054=) AND not specified

Clinical significance:Likely benign (Last evaluated: Dec 31, 2015)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000155044.2

Allele description [Variation Report for NM_022124.6(CDH23):c.3162C>G (p.Thr1054=)]

NM_022124.6(CDH23):c.3162C>G (p.Thr1054=)

Gene:
CDH23:cadherin related 23 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q22.1
Genomic location:
Preferred name:
NM_022124.6(CDH23):c.3162C>G (p.Thr1054=)
HGVS:
  • NC_000010.11:g.71709153C>G
  • NG_008835.1:g.317207C>G
  • NM_001171930.2:c.3162C>G
  • NM_022124.6:c.3162C>GMANE SELECT
  • NP_001165401.1:p.Thr1054=
  • NP_071407.4:p.Thr1054=
  • NC_000010.10:g.73468910C>G
  • NM_022124.5:c.3162C>G
  • p.Thr1054Thr
Links:
dbSNP: rs377259987
NCBI 1000 Genomes Browser:
rs377259987
Molecular consequence:
  • NM_001171930.2:c.3162C>G - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_022124.6:c.3162C>G - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
3

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000204728Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicinecriteria provided, single submitter
Likely benign
(Dec 31, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided33not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, SCV000204728.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testing PubMed (1)

Description

p.Thr1054Thr in exon 27 of CDH23: This variant is not expected to have clinical significance because it does not alter an amino acid residue and it is not locat ed within the splice consensus sequence. It has been identified in 19/66038 Euro pean chromosomes by the Exome Aggregation Consortium (ExAC, http://exac.broadins titute.org; dbSNP rs377259987).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided3not provided3not provided

Last Updated: Sep 29, 2021

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