NM_201384.3(PLEC):c.11208G>A (p.Pro3736=) AND not specified

Germline classification:: Benign (5 submissions)
Last evaluated:: Jun 2, 2021
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000153733.13

Allele description [Variation Report for NM_201384.3(PLEC):c.11208G>A (p.Pro3736=)]

NM_201384.3(PLEC):c.11208G>A (p.Pro3736=)

Gene:

PLEC:plectin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

8q24.3

Genomic location:

Preferred name:

NM_201384.3(PLEC):c.11208G>A (p.Pro3736=)

HGVS:

NC_000008.11:g.143918613C>T
NG_012492.1:g.63133G>A
NM_000445.5:c.11289G>A
NM_201378.4:c.11166G>A
NM_201379.3:c.11142G>A
NM_201380.4:c.11619G>A
NM_201381.3:c.11112G>A
NM_201382.4:c.11208G>A
NM_201383.3:c.11220G>A
NM_201384.3:c.11208G>AMANE SELECT
NP_000436.2:p.Pro3763=
NP_958780.1:p.Pro3722=
NP_958781.1:p.Pro3714=
NP_958782.1:p.Pro3873=
NP_958783.1:p.Pro3704=
NP_958784.1:p.Pro3736=
NP_958785.1:p.Pro3740=
NP_958786.1:p.Pro3736=
NC_000008.10:g.144992781C>T
NM_000445.3:c.11289G>A
NM_000445.4:c.11289G>A
NP_000436.2:p.(=)
p.Pro3763Pro

Links:

dbSNP: rs200273549

NCBI 1000 Genomes Browser:

rs200273549

Molecular consequence:

NM_000445.5:c.11289G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_201378.4:c.11166G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_201379.3:c.11142G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_201380.4:c.11619G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_201381.3:c.11112G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_201382.4:c.11208G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_201383.3:c.11220G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_201384.3:c.11208G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000332200	Eurofins Ntd Llc (ga)	criteria provided, single submitter (EGL Classification Definitions 2015)	Benign (Jun 16, 2015)	germline	clinical testing	Citation Link,
SCV000614597	Athena Diagnostics	criteria provided, single submitter (Athena Diagnostics criteria)	Benign (Jun 2, 2021)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV000732064	GeneDx	criteria provided, single submitter (GeneDx Variant Classification (06012015))	Benign (Mar 3, 2017)	germline	clinical testing	Citation Link,
SCV001929991	Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Benign	germline	clinical testing
SCV001972023	Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Benign	germline	clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	1	not provided	not provided	not provided	not provided	clinical testing
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]

PMID:: 26467025
PMCID:: PMC4737317

Details of each submission

From Eurofins Ntd Llc (ga), SCV000332200.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		1	not provided	not provided	not provided

From Athena Diagnostics, SCV000614597.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From GeneDx, SCV000732064.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001929991.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001972023.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Mar 11, 2025

ClinVar

Relating variation to medicine