NM_006214.4(PHYH):c.717C>T (p.Tyr239=) AND not specified

Clinical significance:Likely benign (Last evaluated: Apr 28, 2014)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000153695.4

Allele description [Variation Report for NM_006214.4(PHYH):c.717C>T (p.Tyr239=)]

NM_006214.4(PHYH):c.717C>T (p.Tyr239=)

Gene:
PHYH:phytanoyl-CoA 2-hydroxylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10p13
Genomic location:
Preferred name:
NM_006214.4(PHYH):c.717C>T (p.Tyr239=)
HGVS:
  • NC_000010.11:g.13283801G>A
  • NG_012862.1:g.21330C>T
  • NM_001037537.1:c.417C>T
  • NM_001323080.1:c.417C>T
  • NM_001323082.1:c.723C>T
  • NM_001323083.1:c.453C>T
  • NM_001323084.1:c.423C>T
  • NM_006214.4:c.717C>TMANE SELECT
  • NP_001032626.1:p.Tyr139=
  • NP_001310009.1:p.Tyr139=
  • NP_001310011.1:p.Tyr241=
  • NP_001310012.1:p.Tyr151=
  • NP_001310013.1:p.Tyr141=
  • NP_006205.1:p.Tyr239=
  • NC_000010.10:g.13325801G>A
  • NM_006214.3:c.717C>T
  • NP_006205.1:p.(=)
  • NP_006205.1:p.(=)
Links:
dbSNP: rs142720126
NCBI 1000 Genomes Browser:
rs142720126
Molecular consequence:
  • NM_001037537.1:c.417C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001323080.1:c.417C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001323082.1:c.723C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001323083.1:c.453C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001323084.1:c.423C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_006214.4:c.717C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000203252EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Likely benign
(Apr 28, 2014)
germlineclinical testing

Citation Link,

SCV001918051Clinical Genetics,Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria providedBenigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot providednot providednot providedclinical testing
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000203252.7

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From Clinical Genetics,Academic Medical Center - VKGL Data-share Consensus, SCV001918051.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 16, 2021

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