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GRCh38/hg38 15q13.3(chr15:31738809-32217725)x3 AND See cases

Germline classification:
Benign (1 submission)
Last evaluated:
Aug 12, 2011
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000148225.3

Allele description [Variation Report for GRCh38/hg38 15q13.3(chr15:31738809-32217725)x3]

GRCh38/hg38 15q13.3(chr15:31738809-32217725)x3

Genes:
LOC130056727:ATAC-STARR-seq lymphoblastoid silent region 6268 [Gene]
LOC129390681:MPRA-validated peak2289 silencer [Gene]
OTUD7A:OTU deubiquitinase 7A [Gene - OMIM - HGNC]
LOC125078053:Sharpr-MPRA regulatory region 11410 [Gene]
CHRNA7:cholinergic receptor nicotinic alpha 7 subunit [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
15q13.3
Genomic location:
Preferred name:
GRCh38/hg38 15q13.3(chr15:31738809-32217725)x3
HGVS:
  • NC_000015.10:g.(?_31738809)_(32217725_?)dup
  • NC_000015.8:g.(?_29818304)_(30297218_?)dup
  • NC_000015.9:g.(?_32031012)_(32509926_?)dup
Links:
dbVar: nssv579435; dbVar: nsv1067685
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000078045ISCA site 4

See additional submitters

criteria provided, single submitter

(Kaminsky et al. (Genet Med. 2011))
Benign
(Aug 12, 2011)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabilities.

Kaminsky EB, Kaul V, Paschall J, Church DM, Bunke B, Kunig D, Moreno-De-Luca D, Moreno-De-Luca A, Mulle JG, Warren ST, Richard G, Compton JG, Fuller AE, Gliem TJ, Huang S, Collinson MN, Beal SJ, Ackley T, Pickering DL, Golden DM, Aston E, Whitby H, et al.

Genet Med. 2011 Sep;13(9):777-84. doi: 10.1097/GIM.0b013e31822c79f9.

PubMed [citation]
PMID:
21844811
PMCID:
PMC3661946

Details of each submission

From ISCA site 4, SCV000078045.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: May 7, 2024