GRCh38/hg38 22q11.22-11.23(chr22:22669543-24563859)x3 AND See cases

Clinical significance:Uncertain significance (Last evaluated: Aug 12, 2011)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000148079.3

Allele description [Variation Report for GRCh38/hg38 22q11.22-11.23(chr22:22669543-24563859)x3]

GRCh38/hg38 22q11.22-11.23(chr22:22669543-24563859)x3

Genes:
  • ADORA2A-AS1:ADORA2A antisense RNA 1 [Gene - HGNC]
  • BCR:BCR activator of RhoGEF and GTPase [Gene - OMIM - HGNC]
  • LOC107963955:BCR-ABL major-breakpoint cluster region [Gene]
  • LOC107963948:BCR-ABL micro-breakpoint cluster region [Gene]
  • LOC107963951:BCR-ABL minor-breakpoint cluster region [Gene]
  • LOC107966121:BCR-ABL p195 breakpoint cluster region [Gene]
  • LOC107963947:BCR-ABL p200 breakpoint cluster region [Gene]
  • LOC107966125:BCR-ABL p225 breakpoint cluster region [Gene]
  • DDTL:D-dopachrome tautomerase like [Gene - HGNC]
  • DDT:D-dopachrome tautomerase [Gene - OMIM - HGNC]
  • GNAZ:G protein subunit alpha z [Gene - OMIM - HGNC]
  • MIF-AS1:MIF antisense RNA 1 [Gene - HGNC]
  • RAB36:RAB36, member RAS oncogene family [Gene - OMIM - HGNC]
  • LOC108491832:RAB36-BCR intergenic enhancer-blocking element 22-1 [Gene]
  • SPECC1L-ADORA2A:SPECC1L-ADORA2A readthrough (NMD candidate) [Gene - HGNC]
  • SMARCB1:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Gene - OMIM - HGNC]
  • LOC112694770:Sharpr-MPRA regulatory region 10281 [Gene]
  • LOC111828506:Sharpr-MPRA regulatory regions 962 and 2236 [Gene]
  • VPREB3:V-set pre-B cell surrogate light chain 3 [Gene - OMIM - HGNC]
  • ADORA2A:adenosine A2a receptor [Gene - OMIM - HGNC]
  • DRICH1:aspartate rich 1 [Gene - HGNC]
  • UPB1:beta-ureidopropionase 1 [Gene - OMIM - HGNC]
  • CABIN1:calcineurin binding protein 1 [Gene - OMIM - HGNC]
  • C22orf15:chromosome 22 open reading frame 15 [Gene - HGNC]
  • CHCHD10:coiled-coil-helix-coiled-coil-helix domain containing 10 [Gene - OMIM - HGNC]
  • DERL3:derlin 3 [Gene - OMIM - HGNC]
  • FAM230I:family with sequence similarity 230 member I [Gene - HGNC]
  • GGT5:gamma-glutamyltransferase 5 [Gene - OMIM - HGNC]
  • GSTT2:glutathione S-transferase theta 2 (gene/pseudogene) [Gene - OMIM - HGNC]
  • GSTT2B:glutathione S-transferase theta 2B [Gene - HGNC]
  • GSTT4:glutathione S-transferase theta 4 [Gene - HGNC]
  • GUCD1:guanylyl cyclase domain containing 1 [Gene - OMIM - HGNC]
  • IGLC1:immunoglobulin lambda constant 1 [Gene - OMIM - HGNC]
  • IGLC2:immunoglobulin lambda constant 2 [Gene - HGNC]
  • IGLC3:immunoglobulin lambda constant 3 (Kern-Oz+ marker) [Gene - HGNC]
  • IGLC7:immunoglobulin lambda constant 7 [Gene - HGNC]
  • IGLJ1:immunoglobulin lambda joining 1 [Gene - HGNC]
  • IGLJ2:immunoglobulin lambda joining 2 [Gene - HGNC]
  • IGLJ3:immunoglobulin lambda joining 3 [Gene - HGNC]
  • IGLJ4:immunoglobulin lambda joining 4 (non-functional) [Gene - HGNC]
  • IGLJ5:immunoglobulin lambda joining 5 (non-functional) [Gene - HGNC]
  • IGLJ6:immunoglobulin lambda joining 6 [Gene - HGNC]
  • IGLJ7:immunoglobulin lambda joining 7 [Gene - HGNC]
  • IGLL1:immunoglobulin lambda like polypeptide 1 [Gene - OMIM - HGNC]
  • IGLL5:immunoglobulin lambda like polypeptide 5 [Gene - HGNC]
  • IGL:immunoglobulin lambda locus [Gene - HGNC]
  • IGLV2-11:immunoglobulin lambda variable 2-11 [Gene - HGNC]
  • IGLV2-14:immunoglobulin lambda variable 2-14 [Gene - HGNC]
  • IGLV2-18:immunoglobulin lambda variable 2-18 [Gene - HGNC]
  • IGLV2-23:immunoglobulin lambda variable 2-23 [Gene - HGNC]
  • IGLV2-8:immunoglobulin lambda variable 2-8 [Gene - HGNC]
  • IGLV3-10:immunoglobulin lambda variable 3-10 [Gene - HGNC]
  • IGLV3-12:immunoglobulin lambda variable 3-12 [Gene - HGNC]
  • IGLV3-16:immunoglobulin lambda variable 3-16 [Gene - HGNC]
  • IGLV3-19:immunoglobulin lambda variable 3-19 [Gene - HGNC]
  • IGLV3-1:immunoglobulin lambda variable 3-1 [Gene - HGNC]
  • IGLV3-21:immunoglobulin lambda variable 3-21 [Gene - HGNC]
  • IGLV3-22:immunoglobulin lambda variable 3-22 [Gene - HGNC]
  • IGLV3-25:immunoglobulin lambda variable 3-25 [Gene - HGNC]
  • IGLV3-9:immunoglobulin lambda variable 3-9 [Gene - HGNC]
  • IGLV4-3:immunoglobulin lambda variable 4-3 [Gene - HGNC]
  • LINC01659:long intergenic non-protein coding RNA 1659 [Gene - HGNC]
  • LINC02556:long intergenic non-protein coding RNA 2556 [Gene - HGNC]
  • LINC02557:long intergenic non-protein coding RNA 2557 [Gene - HGNC]
  • MIF:macrophage migration inhibitory factor [Gene - OMIM - HGNC]
  • MMP11:matrix metallopeptidase 11 [Gene - OMIM - HGNC]
  • MIR5571:microRNA 5571 [Gene - HGNC]
  • MIR650:microRNA 650 [Gene - OMIM - HGNC]
  • PCAT14:prostate cancer associated transcript 14 [Gene - HGNC]
  • RSPH14:radial spoke head 14 homolog [Gene - OMIM - HGNC]
  • RGL4:ral guanine nucleotide dissociation stimulator like 4 [Gene - OMIM - HGNC]
  • LOC111721702:skeletal muscle cis-regulatory module in CABIN1 intron [Gene]
  • LOC111721701:skeletal muscle cis-regulatory module in DERL3 and SLC2A11 intergenic region [Gene]
  • SNRPD3:small nuclear ribonucleoprotein D3 polypeptide [Gene - OMIM - HGNC]
  • SLC2A11:solute carrier family 2 member 11 [Gene - OMIM - HGNC]
  • SPECC1L:sperm antigen with calponin homology and coiled-coil domains 1 like [Gene - OMIM - HGNC]
  • SUSD2:sushi domain containing 2 [Gene - OMIM - HGNC]
  • ZNF70:zinc finger protein 70 [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
22q11.22-11.23
Genomic location:
Preferred name:
GRCh38/hg38 22q11.22-11.23(chr22:22669543-24563859)x3
HGVS:
  • NC_000022.11:g.(?_22669543)_(24563859_?)dup
  • NC_000022.10:g.(?_23012013)_(24959827_?)dup
  • NC_000022.9:g.(?_21342013)_(23289827_?)dup
Links:
dbVar: nssv580281; dbVar: nsv1067653
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000190805ISCA site 4

See additional submitters

criteria provided, single submitter
Uncertain significance
(Aug 12, 2011)
maternalclinical testing

PubMed (1)
[See all records that cite this PMID]

Description

Copy number variation identified through the course of routine clinical cytogenomic testing in postnatal populations. Clinical assertions have been curated as described in Kaminsky et al. 2011.

SCV000190805

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabilities.

Kaminsky EB, Kaul V, Paschall J, Church DM, Bunke B, Kunig D, Moreno-De-Luca D, Moreno-De-Luca A, Mulle JG, Warren ST, Richard G, Compton JG, Fuller AE, Gliem TJ, Huang S, Collinson MN, Beal SJ, Ackley T, Pickering DL, Golden DM, Aston E, Whitby H, et al.

Genet Med. 2011 Sep;13(9):777-84. doi: 10.1097/GIM.0b013e31822c79f9.

PubMed [citation]
PMID:
21844811
PMCID:
PMC3661946

Details of each submission

From ISCA site 4, SCV000190805.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: Mar 12, 2021

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