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NM_001032221.6(STXBP1):c.38-3T>C AND not specified

Germline classification:
Benign (2 submissions)
Last evaluated:
Mar 30, 2012
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000147704.17

Allele description [Variation Report for NM_001032221.6(STXBP1):c.38-3T>C]

NM_001032221.6(STXBP1):c.38-3T>C

Gene:
STXBP1:syntaxin binding protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.11
Genomic location:
Preferred name:
NM_001032221.6(STXBP1):c.38-3T>C
HGVS:
  • NC_000009.12:g.127651600T>C
  • NG_016623.1:g.44394T>C
  • NM_001032221.6:c.38-3T>CMANE SELECT
  • NM_001374306.2:c.38-3T>C
  • NM_001374307.2:c.-5-3T>C
  • NM_001374308.2:c.-5-3T>C
  • NM_001374309.2:c.-5-3T>C
  • NM_001374310.2:c.-5-3T>C
  • NM_001374311.2:c.-5-3T>C
  • NM_001374312.2:c.-5-3T>C
  • NM_001374313.2:c.38-3T>C
  • NM_001374314.1:c.38-3T>C
  • NM_001374315.2:c.38-3T>C
  • NM_003165.6:c.38-3T>C
  • NC_000009.11:g.130413879T>C
  • NM_001032221.2:c.38-3T>C
  • NM_001032221.3:c.38-3T>C
  • NM_003165.3:c.38-3T>C
Links:
dbSNP: rs138763389
NCBI 1000 Genomes Browser:
rs138763389
Molecular consequence:
  • NM_001032221.6:c.38-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374306.2:c.38-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374307.2:c.-5-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374308.2:c.-5-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374309.2:c.-5-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374310.2:c.-5-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374311.2:c.-5-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374312.2:c.-5-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374313.2:c.38-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374314.1:c.38-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001374315.2:c.38-3T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_003165.6:c.38-3T>C - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000171901GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Benign
(Mar 30, 2012)
germlineclinical testing

Citation Link,

SCV000195160Genetic Services Laboratory, University of Chicago
no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000171901.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Genetic Services Laboratory, University of Chicago, SCV000195160.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 15, 2024