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NM_003560.4(PLA2G6):c.109C>T (p.Arg37Ter) AND Iron accumulation in brain

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 8, 2013
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000147282.7

Allele description [Variation Report for NM_003560.4(PLA2G6):c.109C>T (p.Arg37Ter)]

NM_003560.4(PLA2G6):c.109C>T (p.Arg37Ter)

Gene:
PLA2G6:phospholipase A2 group VI [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.1
Genomic location:
Preferred name:
NM_003560.4(PLA2G6):c.109C>T (p.Arg37Ter)
Other names:
NM_003560.4(PLA2G6):c.109C>T; p.Arg37Ter
HGVS:
  • NC_000022.11:g.38169318G>A
  • NG_007094.3:g.50461C>T
  • NM_001004426.3:c.109C>T
  • NM_001199562.3:c.109C>T
  • NM_001349864.2:c.109C>T
  • NM_001349865.2:c.109C>T
  • NM_001349866.2:c.109C>T
  • NM_001349867.2:c.-557C>T
  • NM_001349868.2:c.-382C>T
  • NM_001349869.2:c.-557C>T
  • NM_003560.4:c.109C>TMANE SELECT
  • NP_001004426.1:p.Arg37Ter
  • NP_001186491.1:p.Arg37Ter
  • NP_001336793.1:p.Arg37Ter
  • NP_001336794.1:p.Arg37Ter
  • NP_001336795.1:p.Arg37Ter
  • NP_003551.2:p.Arg37Ter
  • LRG_1015t1:c.109C>T
  • LRG_1015:g.50461C>T
  • LRG_1015p1:p.Arg37Ter
  • NC_000022.10:g.38565325G>A
  • NG_007094.2:g.41373C>T
  • NM_003560.2:c.109C>T
Protein change:
R37*; ARG37TER
Links:
OMIM: 603604.0015; dbSNP: rs200075782
NCBI 1000 Genomes Browser:
rs200075782
Molecular consequence:
  • NM_001349867.2:c.-557C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001349868.2:c.-382C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001349869.2:c.-557C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001004426.3:c.109C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001199562.3:c.109C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001349864.2:c.109C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001349865.2:c.109C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001349866.2:c.109C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_003560.4:c.109C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Iron accumulation in brain
Identifiers:
MedGen: C4021076; Human Phenotype Ontology: HP:0012675

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000194655Genetic Services Laboratory, University of Chicago
criteria provided, single submitter

(ACMG Guidelines, 2007)		Pathogenic
(Feb 8, 2013) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

ACMG recommendations for standards for interpretation and reporting of sequence variations: Revisions 2007.

Richards CS, Bale S, Bellissimo DB, Das S, Grody WW, Hegde MR, Lyon E, Ward BE; Molecular Subcommittee of the ACMG Laboratory Quality Assurance Committee..

Genet Med. 2008 Apr;10(4):294-300. doi: 10.1097/GIM.0b013e31816b5cae.

PubMed [citation]
PMID:
18414213

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV000194655.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 15, 2024