NM_000430.3(PAFAH1B1):c.163T>A (p.Trp55Arg) AND Lissencephaly 1

Clinical significance:Pathogenic (Last evaluated: Feb 8, 2013)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000147023.1

Allele description [Variation Report for NM_000430.3(PAFAH1B1):c.163T>A (p.Trp55Arg)]

NM_000430.3(PAFAH1B1):c.163T>A (p.Trp55Arg)

Gene:
PAFAH1B1:platelet activating factor acetylhydrolase 1b regulatory subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.3
Genomic location:
Preferred name:
NM_000430.3(PAFAH1B1):c.163T>A (p.Trp55Arg)
HGVS:
  • NC_000017.11:g.2666061T>A
  • NG_009799.1:g.77433T>A
  • NM_000430.3:c.163T>A
  • NP_000421.1:p.Trp55Arg
  • NC_000017.10:g.2569355T>A
Protein change:
W55R
Links:
dbSNP: rs587784254
NCBI 1000 Genomes Browser:
rs587784254
Molecular consequence:
  • NM_000430.3:c.163T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Lissencephaly 1 (LIS1)
Synonyms:
Isolated Lissencephaly Sequence; LIS1-Associated Lissencephaly/Subcortical Band Heterotopia
Identifiers:
MedGen: C0431375; OMIM: 607432

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000194364Genetic Services Laboratory, University of Chicagocriteria provided, single submitter
Pathogenic
(Feb 8, 2013)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

ACMG recommendations for standards for interpretation and reporting of sequence variations: Revisions 2007.

Richards CS, Bale S, Bellissimo DB, Das S, Grody WW, Hegde MR, Lyon E, Ward BE; Molecular Subcommittee of the ACMG Laboratory Quality Assurance Committee..

Genet Med. 2008 Apr;10(4):294-300. doi: 10.1097/GIM.0b013e31816b5cae.

PubMed [citation]
PMID:
18414213

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV000194364.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 21, 2018