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GRCh38/hg38 13q21.31(chr13:61877000-63075567)x1 AND See cases

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jan 28, 2013
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000143214.4

Allele description [Variation Report for GRCh38/hg38 13q21.31(chr13:61877000-63075567)x1]

GRCh38/hg38 13q21.31(chr13:61877000-63075567)x1

Genes:
  • LOC130009865:ATAC-STARR-seq lymphoblastoid active region 7805 [Gene]
  • LOC130009866:ATAC-STARR-seq lymphoblastoid active region 7806 [Gene]
  • LOC130009867:ATAC-STARR-seq lymphoblastoid active region 7807 [Gene]
  • LOC126861788:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:63216915-63218114 [Gene]
  • LOC124900156:Sharpr-MPRA regulatory region 11307 [Gene]
  • LINC01074:long intergenic non-protein coding RNA 1074 [Gene - HGNC]
  • LINC01075:long intergenic non-protein coding RNA 1075 [Gene - HGNC]
  • LINC00358:long intergenic non-protein coding RNA 358 [Gene - HGNC]
  • LINC00448:long intergenic non-protein coding RNA 448 [Gene - HGNC]
  • LINC00459:long intergenic non-protein coding RNA 459 [Gene - HGNC]
Variant type:
copy number loss
Cytogenetic location:
13q21.31
Genomic location:
Preferred name:
GRCh38/hg38 13q21.31(chr13:61877000-63075567)x1
HGVS:
  • NC_000013.11:g.(?_61877000)_(63075567_?)del
  • NC_000013.10:g.(?_62451133)_(63649700_?)del
  • NC_000013.9:g.(?_61349134)_(62547701_?)del
Links:
dbVar: nssv1610218; dbVar: nsv932034
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000181518ISCA site 1

See additional submitters

no assertion criteria provided
Likely benign
(Jan 28, 2013) 		not providedclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]
PMID:
20466091
PMCID:
PMC2869000

Details of each submission

From ISCA site 1, SCV000181518.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providedyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: Oct 14, 2023