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NM_000283.4(PDE6B):c.1576G>A (p.Glu526Lys) AND Retinitis pigmentosa

Germline classification:
Likely pathogenic (2 submissions)
Last evaluated:
Apr 1, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000132574.2

Allele description [Variation Report for NM_000283.4(PDE6B):c.1576G>A (p.Glu526Lys)]

NM_000283.4(PDE6B):c.1576G>A (p.Glu526Lys)

Gene:
PDE6B:phosphodiesterase 6B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4p16.3
Genomic location:
Preferred name:
NM_000283.4(PDE6B):c.1576G>A (p.Glu526Lys)
HGVS:
  • NC_000004.12:g.660575G>A
  • NG_009839.1:g.40002G>A
  • NM_000283.4:c.1576G>AMANE SELECT
  • NM_001145291.2:c.1576G>A
  • NM_001145292.2:c.739G>A
  • NM_001350154.3:c.739G>A
  • NM_001350155.3:c.421G>A
  • NM_001379246.1:c.739G>A
  • NM_001379247.1:c.739G>A
  • NP_000274.2:p.Glu526Lys
  • NP_000274.3:p.Glu526Lys
  • NP_001138763.2:p.Glu526Lys
  • NP_001138764.2:p.Glu247Lys
  • NP_001337083.1:p.Glu247Lys
  • NP_001337084.1:p.Glu141Lys
  • NP_001366175.1:p.Glu247Lys
  • NP_001366176.1:p.Glu247Lys
  • NC_000004.11:g.654364G>A
  • NM_000283.3:c.1576G>A
Protein change:
E141K
Links:
dbSNP: rs527236091
NCBI 1000 Genomes Browser:
rs527236091
Molecular consequence:
  • NM_000283.4:c.1576G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001145291.2:c.1576G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001145292.2:c.739G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350154.3:c.739G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350155.3:c.421G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001379246.1:c.739G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001379247.1:c.739G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Retinitis pigmentosa (RP)
Synonyms:
Tapetoretinal degeneration
Identifiers:
MONDO: MONDO:0019200; MeSH: D012174; MedGen: C0035334; Orphanet: 791; OMIM: 268000; OMIM: PS268000

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000172516Department of Ophthalmology and Visual Sciences Kyoto University
no assertion criteria provided
probable-pathogenicnot providednot provided

SCV000926629Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet - VeluxRD
no assertion criteria provided
Likely pathogenic
(Apr 1, 2018)
unknownresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedresearch
not providednot providednot providednot providednot providednot provided1not providedliterature only

Citations

PubMed

Molecular genetic analysis using targeted NGS analysis of 677 individuals with retinal dystrophy.

Jespersgaard C, Fang M, Bertelsen M, Dang X, Jensen H, Chen Y, Bech N, Dai L, Rosenberg T, Zhang J, Møller LB, Tümer Z, Brøndum-Nielsen K, Grønskov K.

Sci Rep. 2019 Feb 4;9(1):1219. doi: 10.1038/s41598-018-38007-2.

PubMed [citation]
PMID:
30718709
PMCID:
PMC6362094

Details of each submission

From Department of Ophthalmology and Visual Sciences Kyoto University, SCV000172516.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot providednot provided

Description

Converted during submission to Likely pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providednot provided1not providednot providednot providednot providednot providednot provided

From Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet - VeluxRD, SCV000926629.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024