NM_000744.7(CHRNA4):c.1352C>T (p.Pro451Leu) AND not provided

Clinical significance:Likely benign (Last evaluated: Jul 13, 2016)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000124287.12

Allele description [Variation Report for NM_000744.7(CHRNA4):c.1352C>T (p.Pro451Leu)]

NM_000744.7(CHRNA4):c.1352C>T (p.Pro451Leu)

Gene:
CHRNA4:cholinergic receptor nicotinic alpha 4 subunit [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.33
Genomic location:
Preferred name:
NM_000744.7(CHRNA4):c.1352C>T (p.Pro451Leu)
Other names:
p.P451L:CCG>CTG
HGVS:
  • NC_000020.11:g.63350059G>A
  • NG_011931.1:g.16285C>T
  • NM_000744.7:c.1352C>TMANE SELECT
  • NM_001256573.2:c.824C>T
  • NP_000735.1:p.Pro451Leu
  • NP_000735.1:p.Pro451Leu
  • NP_001243502.1:p.Pro275Leu
  • NC_000020.10:g.61981411G>A
  • NM_000744.5:c.1352C>T
  • NM_000744.6:c.1352C>T
  • NR_046317.2:n.1561C>T
Protein change:
P275L
Links:
dbSNP: rs55915440
NCBI 1000 Genomes Browser:
rs55915440
Molecular consequence:
  • NM_000744.7:c.1352C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001256573.2:c.824C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_046317.2:n.1561C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000511231Center for Pediatric Genomic Medicine,Children's Mercy Hospital and Clinicscriteria provided, single submitter
Likely Benign
(Jul 13, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001930348Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria providedLikely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedclinical testing
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Pediatric Genomic Medicine,Children's Mercy Hospital and Clinics, SCV000511231.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Converted during submission to Likely benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot provided0.00197not providednot provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001930348.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 4, 2021

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