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NM_000492.4(CFTR):c.1624G>T (p.Gly542Ter) AND Hereditary pancreatitis

Germline classification:
not provided (1 submission)
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000119041.13

Allele description [Variation Report for NM_000492.4(CFTR):c.1624G>T (p.Gly542Ter)]

NM_000492.4(CFTR):c.1624G>T (p.Gly542Ter)

Genes:
CFTR:CF transmembrane conductance regulator [Gene - OMIM - HGNC]
LOC111674475:CFTR intron 11 enhancer [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
7q31.2
Genomic location:
Preferred name:
NM_000492.4(CFTR):c.1624G>T (p.Gly542Ter)
Other names:
p.Gly542Ter
HGVS:
  • NC_000007.14:g.117587778G>T
  • NG_016465.4:g.126995G>T
  • NG_056131.3:g.733G>T
  • NM_000492.4:c.1624G>TMANE SELECT
  • NP_000483.3:p.Gly542Ter
  • NP_000483.3:p.Gly542Ter
  • LRG_663t1:c.1624G>T
  • LRG_663:g.126995G>T
  • LRG_663p1:p.Gly542Ter
  • NC_000007.13:g.117227832G>T
  • NG_016465.1:g.112816G>T
  • NM_000492.3:c.1624G>T
  • NM_000492.4:c.1624G>T
  • NP_000483.3:p.Gly542*
  • p.Gly542X
Protein change:
G542*; GLY542TER
Links:
Genetic Testing Registry (GTR): GTR000074114; Genetic Testing Registry (GTR): GTR000500233; OMIM: 602421.0009; OMIM: 602421.0095; dbSNP: rs113993959
NCBI 1000 Genomes Browser:
rs113993959
Molecular consequence:
  • NM_000492.4:c.1624G>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Hereditary pancreatitis (PCTT)
Synonyms:
Hereditary chronic pancreatitis
Identifiers:
MONDO: MONDO:0008185; MedGen: C0238339; Orphanet: 676; OMIM: 167800

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000153747GeneReviews
no classification provided
not providedgermlineliterature only

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedliterature only

Details of each submission

From GeneReviews, SCV000153747.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature onlynot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 20, 2024